Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi08g1446 | ATGGGAACATCAGGTGTTGATGGTGAAGATCAACACGCCATATCTTCATCTTCTTCTTCTGCTGGAGTTGTAAATACGATTGATAGTAACAACACTGTAAGTGGAACGTGGTATGGGGTGCCATTGCCTTCTTCACTCTCTTTTTTACTGGATTACTCTGGTCGTCTCCGATCGAACTCGTCAATCGGACATTCTGAGTCTGTAACTGACAACAACGAAGCTACCACTTCTGAATTGCGCCATGACCATCAATCTTCCTCGTTGGATTCAACGGCTGTAACCATTTGCAGTGGCCGCAGTGAGAGCAGTTCAGGGGAAGTTGCTATACGGATTAGTAGAGCAATGGGACGGAATCATAATGCAGGGTTGGGTTTGGTATCTTCAAGTTCGCAAAATCAGTCTTTAGAGGATGATTTGAGGGTAGATAAAGGTAGAATGTCTGTGCTGGATGAGGATGCTGAGGGTAGCAGTGGAATTTTGGCTAGTGAGAGAGTTCCTCTAGTGTCCTCATCATCGTCTCTGGCTGGTAGTACTAGTGGGCATGGTGATGTTGGTGTTGGGAATGGATTGGAAAGTAACATTCGGGGTTTATCAACCCATGAAAGTAATGATTTTCAGCAACTTGCTAAATGGCTTGAGCAGGTTCTGCCTTTCTCGCTGTTGTTGTTGGTTGTGTTCATTCGCCAGCATTTACTAGGTTTCATCATTACAATTTGGATTTCAATTGTGATGTTAAAGTCAAATGAAATGGTTAAGAGGCAGACAGCTTTAAAGGGAGACAGGAAAGTCTCAGTTCTCATCAGTATCTCATTTGTCTTCATGCTTCATGTGATGTTCATTTACTGGTGGTATCAAGATGATGATCTTTTATACTCACCACTCATCTTGCTTCCCCCAAAAGCAACACCTCATTTCTGGCATGCAATATTCGTTGTTCTGATTAATGATGTACTGGTGCGGCAAGCAGCAATGTCTTTCAAATGCTTGTTACTTGTATATTTCAAAAATGACAGAGGTCACAGCTTCCGTCTGCAGGCTCAAATATTAACTCTGGTCGAGCACATGCTGCTGCTGTACCGTACGTTGTTGCCAACACCTGTTTGGTACCGATTTTTCCTAAACAGGGAATACGGAAGTCTCTTTTCATCACTGACCACAGGGTTGTACCTAACCTTCAAGTTAACTTCTGCTGTTGAGAAGGTCCAATGCTCCTTTTCTGCCTTAAAAGCATTATGGGGCAAGGATATTCACTATGGTGTTTATGCTACAAAGGAACAGGTAAATGCTGCTGGTGACCTTTGTGCTATATGCCAGGAGAAGACACGTGGTCCTATCCTGTTGCGCTGTAAACACATTTTCTGTGAAGAGTGTGTGTCAGAATGGTTTGACAGAGAAAGAACTTGTCCACTATGTAGGGCATTGGTGAGGGCTGGTGATATTCGGTCTTTTGGGGATGGATCAACAAGTCTGTTTTTCCAGCTATGTTAA | 1488 | 0.4328 | MGTSGVDGEDQHAISSSSSSAGVVNTIDSNNTVSGTWYGVPLPSSLSFLLDYSGRLRSNSSIGHSESVTDNNEATTSELRHDHQSSSLDSTAVTICSGRSESSSGEVAIRISRAMGRNHNAGLGLVSSSSQNQSLEDDLRVDKGRMSVLDEDAEGSSGILASERVPLVSSSSSLAGSTSGHGDVGVGNGLESNIRGLSTHESNDFQQLAKWLEQVLPFSLLLLVVFIRQHLLGFIITIWISIVMLKSNEMVKRQTALKGDRKVSVLISISFVFMLHVMFIYWWYQDDDLLYSPLILLPPKATPHFWHAIFVVLINDVLVRQAAMSFKCLLLVYFKNDRGHSFRLQAQILTLVEHMLLLYRTLLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSAVEKVQCSFSALKALWGKDIHYGVYATKEQVNAAGDLCAICQEKTRGPILLRCKHIFCEECVSEWFDRERTCPLCRALVRAGDIRSFGDGSTSLFFQLC | 495 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi08g1446 | 495 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Mibi08g1446 | 495 | Pfam | Zinc finger, C3HC4 type (RING finger) | 432 | 475 | - | - | |
| Mibi08g1446 | 495 | MobiDBLite | consensus disorder prediction | 60 | 91 | - | - | |
| Mibi08g1446 | 495 | SMART | ring_2 | 434 | 471 | IPR001841 | - | |
| Mibi08g1446 | 495 | MobiDBLite | consensus disorder prediction | 60 | 74 | - | - | |
| Mibi08g1446 | 495 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 418 | 481 | IPR013083 | - | |
| Mibi08g1446 | 495 | CDD | RING-HC_RNFT1_like | 433 | 472 | - | - | |
| Mibi08g1446 | 495 | MobiDBLite | consensus disorder prediction | 9 | 24 | - | - | |
| Mibi08g1446 | 495 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 17 | 494 | IPR044235 | GO:0061630|GO:1904294 | |
| Mibi08g1446 | 495 | ProSitePatterns | Zinc finger RING-type signature. | 449 | 458 | IPR017907 | - | |
| Mibi08g1446 | 495 | ProSiteProfiles | Zinc finger RING-type profile. | 434 | 472 | IPR001841 | - | |
| Mibi08g1446 | 495 | SUPERFAMILY | RING/U-box | 427 | 476 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi08g1446 | Mibi-ChrMibi08 | 30679346 | 30683702 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi08g1446 | 44 | 494 | C3H Transcription Factor Family | AT5G01960 | 54.767 | 7.29e-169 | 481 |