LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi08g1434	ATGGACGAGGAAGTTAGTAGATTGATTAATAGGGCTTGTGAGTTGGCCAGAAACCTTGAATCGAACATACCCAATATCGGCGGCGATTCTTCTGAATCGGTGTTGAGGTGTATTGATGAGATTGTGGTGAACCTTAATGCTGCTAAAGAGAAGCTTTCGCAGGTGTCGCCGCCTCAAGAAGCTGCGAGTGAGCCGGAAATGACACATGTACAGCAGCCTCATCATCAAATGGCTTCTCCTTCTTCGTTGTTGTTGCAAGAATGGCTATCTGCTAGCCGTCAGTTTGTCCAAATGCCTCAGCTTCAAGCTCCGGCGAGAACAGCAACGTTGGCACCCTCGCCGCCCGGAGGTACCCTGCAGGTCATGACTGACTTGGGTGCGAGAGATGTAGATGATGTTGAATCATCTCCTTCTTCTAGACGCCGAAAAAGCAGGAAAGAAGAAGCAGAGAAGAGGACAGTGATGGTCCCAGCAGTTCAGTTTGGGAACACAGATGTGCCACCAGATGATGGCTATACCTGGAGAAAATATGGCCAAAAAGAGATCTTAGGCTCTAATTTCCCCAGGAGTTACTTCAGGTGCACCCACCAGAAACTATATCAATGCCCAGCGAAGAAACAAGTGCAGCGTCTGGATAATAACCCTAACATATTTGCAGTAACATATAGGGGTAATCACACATGCCACATGTCTTCCACAGCTCCATCTTCATCAGTTCCACCACAACTAATTATCTCACAACAGTCACAACATGACATCACACACATTAGTGCCACCACCACCACCACTTCCTCCCAATTGTCTCCATCTTCATCAGTTCCTTGTTGGTTGTCACCTCTCCACCTCAGCCTCCTTGCTGGAGGCGGCGGCGGCGGAGGGAATCCGGCAGGTGCGGAGGCCGGCGGTGGCACTGTGGGCCCCTCTACGTCGTCAAGATTTGGAGCTGCTGATAATTACCCCGTGGCGGATATGGCTGATGCCATGTTTAATTCAGGTTCTAGTAGTGGTAATAGCATGGAGTCTCTGTTTGCTTCTAATGATGAAAAATGGGAAGCAGGCGACAATAAGAAAAGCTAA	1077	0.4893	MDEEVSRLINRACELARNLESNIPNIGGDSSESVLRCIDEIVVNLNAAKEKLSQVSPPQEAASEPEMTHVQQPHHQMASPSSLLLQEWLSASRQFVQMPQLQAPARTATLAPSPPGGTLQVMTDLGARDVDDVESSPSSRRRKSRKEEAEKRTVMVPAVQFGNTDVPPDDGYTWRKYGQKEILGSNFPRSYFRCTHQKLYQCPAKKQVQRLDNNPNIFAVTYRGNHTCHMSSTAPSSSVPPQLIISQQSQHDITHISATTTTTSSQLSPSSSVPCWLSPLHLSLLAGGGGGGGNPAGAEAGGGTVGPSTSSRFGAADNYPVADMADAMFNSGSSSGNSMESLFASNDEKWEAGDNKKS	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi08g1434	358	MobiDBLite	consensus disorder prediction	330	344	-	-
	Mibi08g1434	358	Pfam	WRKY DNA -binding domain	169	228	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi08g1434	358	MobiDBLite	consensus disorder prediction	127	152	-	-
	Mibi08g1434	358	SMART	WRKY_cls	168	230	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi08g1434	358	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	36	264	IPR044810	GO:0003700
	Mibi08g1434	358	SUPERFAMILY	WRKY DNA-binding domain	164	230	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mibi08g1434	358	Gene3D	WRKY domain	154	231	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mibi08g1434	358	MobiDBLite	consensus disorder prediction	330	358	-	-
	Mibi08g1434	358	ProSiteProfiles	WRKY domain profile.	169	231	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi08g1434	Mibi-ChrMibi08	30506210	30509176	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi08g1434	3	347	WRKY Transcription Factor Family	AT2G40740	37.677	1.13e-53	177

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Mibi08g1434		WRKY	3.7e-27	CL0274