Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1404 ATGGGGAAATTGCTGATGGGAAAGTACGAGGTTGGCAGGTTATTAGGTCAAGGAAATTTTGCAAAGGTTTACCATGCAAGGGACCTTAGAACTGGGAATAATGTTGCCATTAAGATGATTGATAAGGAGAGGATTCTAAAAGCTGGTATGATTGATCAAACAAAGCGAGAAATATCGATCATGGGACTGGTTAAACATCCAAATGTACTGCAGCTTTATGAGGTATTGGCCACCAAAACCAAGATTTACTTCATCATGGAATATGCCAAAGGGGGTGAACTCTTCATGAAGCTGACTAAAGGCAGATTACACGAAAACTTGGCAAGGCATTACTTTCAACAATTGATCAGCGCGGTAGAATGTTGCCACAGCAATGGGGTTTATCATAGGGATTTGAAGCCAGAGAATTTGCTTTTGGATGAGAATGGAAATCTCAAGGTTGCAGATTTTGGATTGAGTGCCCTTGTTGAATCTCATCGCCAAGGAAGCTTACTGCACACAACTTGTGGAACTCCTGCTTATGTTGCTCCTGAAGTTATAAACCAAAAGGGCTATGATGGAGCAAAATCTGACATATGGTCTTGTGGGGTGATCTTATATGTTCTGTTGGCTGGTCAATTGCCATTCCATGATGGAAATCTTATGGAATTGTATAGGAAAATACGCAGTGCAAGGTACAGATGTCCAAACTGGTTTTCATTTGAAGCGCGCAAGCTGTTGTTCAGAATCCTTGACCCTAACCCTGATACTAGAATTACCATATCAAAGATTAGGGAAAGTTCCTGGTACAAAAATGGACTCAGTTCAAAGGCTGATGGAATTAAAAAACCAGTTACAGATGTAGAGGAGGATTCAGTCAAGGCTGATCCAAGTCTTGGTCTACCTGAGAATGAAAGTGCTGCTACTTCTGAGGCTAATAATCAAGCATTGGTACAACCTACTAATTTGAATGCTTTTGATATAATTTCTCTATCGGCTGGATTTGATTTGTCTGGGCTTTTTGCAAGAAGCAATGAAAGGACAGATGTGAAATTTATGTCACTCCACTCTGCCTCGTCTATCATTTCTGCGATAGAAGGTATGGCTCGTGTCTTGGGGCTGAAGGTAACGAAAATAGATGGAGGATTGCTGAAGTTGGAGAGATATGGTGAAGGAAGAATGGAGCCTCTATCCATTGATGCTGAAATATTTGAGTTCACCCCATCTTTCCATTTGATTGAGATGAAGAAGTCTGGTGGTAATTCAGTAGAATACCAGAAGATGTTGGAGGAGGAAATCAGACCAGCTCTCACAGAATTTGTGTGGGCTTGGCAAAGATGA 1320 0.4114 MGKLLMGKYEVGRLLGQGNFAKVYHARDLRTGNNVAIKMIDKERILKAGMIDQTKREISIMGLVKHPNVLQLYEVLATKTKIYFIMEYAKGGELFMKLTKGRLHENLARHYFQQLISAVECCHSNGVYHRDLKPENLLLDENGNLKVADFGLSALVESHRQGSLLHTTCGTPAYVAPEVINQKGYDGAKSDIWSCGVILYVLLAGQLPFHDGNLMELYRKIRSARYRCPNWFSFEARKLLFRILDPNPDTRITISKIRESSWYKNGLSSKADGIKKPVTDVEEDSVKADPSLGLPENESAATSEANNQALVQPTNLNAFDIISLSAGFDLSGLFARSNERTDVKFMSLHSASSIISAIEGMARVLGLKVTKIDGGLLKLERYGEGRMEPLSIDAEIFEFTPSFHLIEMKKSGGNSVEYQKMLEEEIRPALTEFVWAWQR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1404 439 SUPERFAMILY Protein kinase-like (PK-like) 5 292 IPR011009 -
Mibi08g1404 439 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Mibi08g1404 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Mibi08g1404 439 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g1404 439 FunFam Non-specific serine/threonine protein kinase 3 306 - -
Mibi08g1404 439 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Mibi08g1404 439 FunFam Non-specific serine/threonine protein kinase 311 435 - -
Mibi08g1404 439 ProSiteProfiles Protein kinase domain profile. 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g1404 439 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 428 - -
Mibi08g1404 439 Gene3D Kinase associated domain 1, KA1 316 436 - -
Mibi08g1404 439 SMART serkin_6 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g1404 439 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Mibi08g1404 439 Gene3D Transferase(Phosphotransferase) domain 1 3 315 - -
Mibi08g1404 439 CDD CIPK_C 317 430 - -
Mibi08g1404 439 Pfam NAF domain 313 371 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1404 Mibi-ChrMibi08 30183330 30184649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1404 4 438 CBL-interacting serine-threonine protein kinases AT5G58380 58.691 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Mibi08g1404 Pkinase 3.2e-72 CL0016