Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1371 ATGTCTCACAAAAAGAGGAATTTTCATCAATCAAAGCATCCATTGAAATCTAACCCCTTTGAGGCATTTCTCTCTGGCTCATGGAATCCTGTGGATCACATAAAAATTGAGGGAGGAACTTCAACTCTGCATTTTATCGATAATCAGAAAAGAGTTTTGAAGAAAGGTCCTGATCCAGACATTCGGATAAGGTCGAGGAAAGCTACTCTATCAGATTGCAGCTTTCTAAGACCTGGAATTGATGTATGTGTGTTATCAGCCTCCTCTCAAAAGGGTAATAATCCAGGAAAAAAATGTCTTGAACCTGGATGGGTTGATGCTAGAATAAAATCTGTACAGAGAAAGCCTCACCTATCTGAGTGCTCATGTGAATATTTTGTCAACCTGTATGTTAATCAAGGTTGTTATGATCTAGAGATGAGAATTCTTGATAAGGAGATCAAAGCAGTGGGCATAAATCAAATATCCATTCTCCAGAAGCTTGATTATAATCCCTGTGACGATCCAAATTATCGGTGGGATTCATCTGAGGATTGCTTCAAAGCACGGAAGACCAAATTGTTCATAGGAAAATTCTTATCTGATCTTTCATGGTTAGTTGTTGCATCAATTTTAAAGCAGGTCTCATTCTGTGTAAGATCTGTAGATGGCAAGATTGTGTATCAAATTTTGGGATGTGAACGTTCTAGCTCTTCATTGAACTATAACTCTCTTAAACATGTAAATTTCAGAGTAGAAAATGGGATGTTAGTACCCATTGTTTCTCATGTCATTCCATCGGGCAACAAGAAGGTAGGTCAAGCAAAAAACGCATATGAAGATGAGATCTCACCAATTTCTTGCATTGAGGGCTTACGGCGCTCCAAACGTCGTAACATAGAACCTGAACGTTATCTTGGTTATGATGATGTCTCCAAGTTGGATTTTGGTCACGTTCGAACCGCTTTACCCAAGTCCAACCCAAGAGATGATGATAACAAAGATGATGTTGATATGCTACCGAATTGTCTAGGAAAGGACATAGATGCATGTCAAAATATTAAGAAGATAAATACTTGCCTGAAGGTCCAAGCTAACAACAGTAGGGATGCAAGTGGGAAGGTGAAATTAGATAATGTTGATGAAAAATGTCATGAGGTTCAACTTGTAAAGGATTCTCTGCCTGATGGAGGTCGTCTGCAAGCCCTTGACCATTCTTTTCTCGACACCTATAGTACTGGAAATTTTAGGCATGAAGATTGTGTTTTTTCTGGAGATAATCATCAGATTCATAGCCCTAAACTGAACAGGAAAAATGTTGATCCATGGACATTCAATCCCTATGATCATCAATCAAAAGTTCCTGATCCTGAAAATCCTGCAATAGAGATTGATGATAAATCTTCTGTATGTTATTCTTTTGGTACCTGCAATGTCCAGAGGAAGGATTTATCTGATCTGGAGGACATTGATACTGAAGATAGATGGAAATGGATACATTCTAATGAAGAAATACAAGAAGAAAAGTATCACCCACCAATGACAAGAAGCAAAAGTCGTGAGAAAGAGAGAACCTACAAAGACAGATCCTTATGTGATGCTGAAAATTCTGCAGAAGTGATTGATGATAAATCTTATAGATGTCATTATTATGATACTTGTAATGTACAGAGGAAAAATCTATCTGGTTTAGGGGACATGGATACCGAAACTAAACAGGAAGGGATGCATACCAATAAAGAAATTCAAGAGGAAAAATATCATTCACCAATGACAAGAAGTAAAACTCGAGGGGAAGAAAGAACCTGCAAAGACCGATCCTTAAGTGATACTGGAAATTGTTCAAAAGAGATTGGTGATAAATCTTCCACATGTTATTATTTTGGTACATGTTATGTGCAGAGGAAGGCTTTATCTGGTCTGGAGGATGTGGATACTGAAAATAAATGGGAAGGGGAATATTCCAATAAAGAAATTCAAGGGAGAAAATATCATTCACCAATGACAAGAAGTAAAAGTCATGGGGAAGGAAGAACTTACAGAAAAAGATCATCAAGTGATGCTGCCTACAAGGAATTGATAGATCTGTACTTAAAGAATGTTGATACGATGCCAACTAAGGAGGAGCCTCCTTTAACTGACCAGTGGGTAGAATTTAAGGCAACAAGTGACTATGGGCAAAACAGGGGAGCAGAAGCTGATGGAGAAGTTTCTGAAATTGATATGTTGTGGAGAGAAATGGAAGTTGCATTAGCATCAAATTATGTTTTAGATAACACAGAGGGTTCAAAGGCTGCAGTCTTGTCTGGGATTGAGGAAGATTCTAACAAACTTTGTCAACACGACTTTAGATTGGATGAAGAAATTGGGATTTACTGCTGGAAATGTGGCTTTGTGAGCACAGAGATAAGAGACATTTCACCACCTTTTAACTTGGGATGGCAACATGATGAAAAGCAGTGGAATGCTGAAAATTCGGAGGCAAATGCCGATGTAAATGATAGTTTACATCTCTTGTCAGATCACACCTCAACTGATATGCCTGTATCTGAAGAAAATGATATCTGGCGACTGACCCCTGAACTTACTAGTAAGTTGCTTGTCCACCAGAAAAAAGCTTTTGAATTTCTTTGGAAAAATATTTCTGGATCTGTGGAACCATCATCTGTGAAAGCTGCATCTCAAAGAACAGGTGGCTGTGTGATATCTCATTCACCCGGAGCTGGAAAAACTTTTCTAATTATCGCATTTCTTGCGAGCTACTTGAAGCTGTTCCCAGGAAAGAGACCTTTGGTCCTTGCTCCAAAGACAACACTTTATACGTGGTATAAAGAATTTATCAAATGGGAAATTCCTATACCGGTGCATCTGATCCAATCTCAACGTAGAGCCCTTGGAATATGCAAGGAGAAGCCAATTGTTATTCCTGGTGTTCCAAAGCTCACCGGAGATGGTCTAAACATGTTGAGAAAGATCACAAATGGATTTATAGATGTTTATGAAGGTGGAAGTTCGGATAATCTTCCTGGTTTGCATGTTTATACATTGTTAGTGAATATTACTGATTATCAAGAACAGATTTTTCGGGAACTCTATGATAAAGTATCCGACTCCAATCGATATCCTCTGGAGGTGGAGCTTTTGGTAACCCTGGGAGCAATACATCCATGGCTAATCAAAACGGCTGCATTCTCTGATAAGTTTTTAACTGAAGATCAACTGAGGGAGCTGGAAAAATGCAAGTTTGATTTGAAGATAGGACCGAAAGTACGGTTCGTTTTGAGCCTTGTATGTCGTGTTGTCAATGAGGAAAAGACTCTTGTCTTTTGCCACTACATTGCACCTATGAAATTGTTTGTAGAACTTTTTGAGAAATTGTTCGGATGGAAGATAGGTCGTGAAGTTTTAGTACTTAGCGGTGAACAAGATCTCTTTGAACGTGGTAGAGTCATTGATAAGTTTGAGGAGCCTGGAGGAGCATCAAAGGTACTTCTTGCTTCAATCACAGCCTGCTGTGAAGGCATTAGTCTCACTGCAGCTTCTCGTGTGATTTTGTTGGATTCAGAGTGGAATCCATCAAAGACAAGGCAAGCCATTGCTCGCGCCTTTCGTCCTGGTCAGCAAAGGATTGTATATGTGTATCAGCTTTTGGTGACAGGCACAATGGAGGAAGAAAAGTATAAGCGAACCAACAGGAAAGAGCGGGTTTCAAGGATGATTTTTAGCGAGGATTTTGTGGAGGATCAGTCCCAATGGCAAGCAGAAAAGCTGGAAGATGATATCCTTCGAGAAATGATAGCTGAAGACAAGTCTAAAATATTCCATATGATAATGAAAGATGAGAAGGCTTCAACCAACTGA 3840 0.3909 MSHKKRNFHQSKHPLKSNPFEAFLSGSWNPVDHIKIEGGTSTLHFIDNQKRVLKKGPDPDIRIRSRKATLSDCSFLRPGIDVCVLSASSQKGNNPGKKCLEPGWVDARIKSVQRKPHLSECSCEYFVNLYVNQGCYDLEMRILDKEIKAVGINQISILQKLDYNPCDDPNYRWDSSEDCFKARKTKLFIGKFLSDLSWLVVASILKQVSFCVRSVDGKIVYQILGCERSSSSLNYNSLKHVNFRVENGMLVPIVSHVIPSGNKKVGQAKNAYEDEISPISCIEGLRRSKRRNIEPERYLGYDDVSKLDFGHVRTALPKSNPRDDDNKDDVDMLPNCLGKDIDACQNIKKINTCLKVQANNSRDASGKVKLDNVDEKCHEVQLVKDSLPDGGRLQALDHSFLDTYSTGNFRHEDCVFSGDNHQIHSPKLNRKNVDPWTFNPYDHQSKVPDPENPAIEIDDKSSVCYSFGTCNVQRKDLSDLEDIDTEDRWKWIHSNEEIQEEKYHPPMTRSKSREKERTYKDRSLCDAENSAEVIDDKSYRCHYYDTCNVQRKNLSGLGDMDTETKQEGMHTNKEIQEEKYHSPMTRSKTRGEERTCKDRSLSDTGNCSKEIGDKSSTCYYFGTCYVQRKALSGLEDVDTENKWEGEYSNKEIQGRKYHSPMTRSKSHGEGRTYRKRSSSDAAYKELIDLYLKNVDTMPTKEEPPLTDQWVEFKATSDYGQNRGAEADGEVSEIDMLWREMEVALASNYVLDNTEGSKAAVLSGIEEDSNKLCQHDFRLDEEIGIYCWKCGFVSTEIRDISPPFNLGWQHDEKQWNAENSEANADVNDSLHLLSDHTSTDMPVSEENDIWRLTPELTSKLLVHQKKAFEFLWKNISGSVEPSSVKAASQRTGGCVISHSPGAGKTFLIIAFLASYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVHLIQSQRRALGICKEKPIVIPGVPKLTGDGLNMLRKITNGFIDVYEGGSSDNLPGLHVYTLLVNITDYQEQIFRELYDKVSDSNRYPLEVELLVTLGAIHPWLIKTAAFSDKFLTEDQLRELEKCKFDLKIGPKVRFVLSLVCRVVNEEKTLVFCHYIAPMKLFVELFEKLFGWKIGREVLVLSGEQDLFERGRVIDKFEEPGGASKVLLASITACCEGISLTAASRVILLDSEWNPSKTRQAIARAFRPGQQRIVYVYQLLVTGTMEEEKYKRTNRKERVSRMIFSEDFVEDQSQWQAEKLEDDILREMIAEDKSKIFHMIMKDEKASTN 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1371 1279 Pfam Helicase conserved C-terminal domain 1082 1198 IPR001650 -
Mibi08g1371 1279 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1085 1251 IPR001650 -
Mibi08g1371 1279 Pfam SNF2-related domain 872 955 IPR000330 GO:0005524|GO:0140658
Mibi08g1371 1279 MobiDBLite consensus disorder prediction 653 677 - -
Mibi08g1371 1279 SMART ultradead3 855 1162 IPR014001 -
Mibi08g1371 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1266 IPR027417 -
Mibi08g1371 1279 Gene3D - 829 965 IPR038718 -
Mibi08g1371 1279 MobiDBLite consensus disorder prediction 573 604 - -
Mibi08g1371 1279 Gene3D - 1002 1279 IPR027417 -
Mibi08g1371 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 848 954 IPR027417 -
Mibi08g1371 1279 MobiDBLite consensus disorder prediction 573 605 - -
Mibi08g1371 1279 CDD SF2_C_SNF 1074 1210 - -
Mibi08g1371 1279 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 977 1278 IPR044567 GO:0080188
Mibi08g1371 1279 SMART helicmild6 1110 1199 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1371 Mibi-ChrMibi08 29778614 29784089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1371 1097 1229 RAD5 or RAD16-like Gene Family AT5G43530 36.090 3.37e-13 72.8