Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1367 ATGGATTGTTCTGACTTTCCCAACAAAGCTTTAACGAGAACGCGATTTTCTGAGCTGAACCCGCCTCTTTCTGAACCGGTTCTCAAATCACTATCAGATTCTGGCTTCCAGTTTTGCACGCCGGTTCAAGCAGCCACAATACCTTTGCTATGCAGTTTTAAGGACGTGGCCGTTGACGCCGCCACCGGTTCAGGCAAGACTCTGGCATTTGTCATCCCTCTTGTTGAGATTCTCCGCCGATCCTCTTCCAATCCCAAGCTTCATCAGGTATTTGGAATAATTATATCTCCCACAAGGGAGCTGTCATCCCAAATATACCATGTTGCACAACCTTTCATTAACACTTTAGCTAATGTGAAGTCCATGCTCCTTGTTGGTGGAGTAGACGTTAAAGCAGATATGAAGAAAATTGAGGAAGAAGGAGCTAATATATTGATCGGTACACCTGGTCGGCTGTATGACATAATGGATCGAATGGATGTATTGGATTTTAAAAGCCTCGAGATTTTAATTTTAGACGAGGCTGATAGACTCCTGGATATGGGATTCCAGAAGCAGATTAACTCCATTATATCTCTCCTACCAAAGCTTCGCAGAACAGGTCTATTCTCTGCTACTCAAACTGAGGCAGTTGAAGAGCTTTCTAAAGCCGGGCTGAGGAACCCTGTGAGGGTTGAAGTCCGGGCAGAGTCAAAATCAGTAAATAACCCTGCAGCATCGCAACAACCAACCTCTTCAAGGACGCCTGCAGGACTTCAGATTGAGTACATGGAATGCGAGGCTGAAAGGAAACCATCACAGCTTGTTGATATCTTGGTGAAGAACCGCTCCAAAAAAATGATAATATACTTCATGACCTGTGCCTGTGTTGACTATTGGGGACTTGTACTTCCTCGCCTTTCTGCTTTGAAAGGTTTCTCCTTGATCCCTCTTCATGGAAAGATGAAGCAGGCTGCTAGGGAGAAGGCATTGGCATCATTTACATCTCTTTCAAATGGAATACTTCTATGTACTGATGTTGCAGCACGTGGACTTGACATACCTGGAGTTGATTGTATAGTGCAGTATGATCCCCCACAAGATCCAAATGTTTTCGTACATAGAGTTGGCCGAACTGCTCGGCTGGGTAAACAAGGACATGCTATTGTCTTCTTATTGCCAAAGGAAGAATCTTATGTAGAATTCCTGCGTGTAAGAAGAGTCCCCCTCCAAGAGGGAAGTTGCTCTAATGACGCCTCTGATGTTGTTCCTGAGATTCGTTCTGCTGCAAAAAAAGATCGTGATGTAATGGAGAAAGGACTCAGGGCATTTGTTTCTTATATTCGTGCTTATAAAGAGCATCATTGCTCCTATATTTTTAGGTGGAAAGAACTTGAAATCGGTAAGTTGGCCATGGGATATGGCTTACTGCAGCTTCCTTCAATGTCAGAGTTAAAACAGCAGTCATTGTCCGCAGAAGGTTTTGTGCCAGTTGAAGACATTAATTTGGAGGACATTAAGTTCAGGGATAAATCTCGTGAAAAGCAAAGGAAGCAAAACCTGCAAGCAAAGAAAGAAGCCAAACAGAAAGAGACGAAGCCTCAGAAATCCAACAAAAACCCAAAATCCGCCCCTGTAACAAGGAAGAAAACTGCTAAACAGAGACGTGCTCAGCAGTCAGTTGAAGATGAAGATGAGCTTAGGCAAGATTATCGGATGTGGAAAAAATTGAAAAAAGGAACTATAGATGAGGATGAGTATGCTAAATTAACAGGCACTGAAGAATTACTTTGA 1773 0.432 MDCSDFPNKALTRTRFSELNPPLSEPVLKSLSDSGFQFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVIPLVEILRRSSSNPKLHQVFGIIISPTRELSSQIYHVAQPFINTLANVKSMLLVGGVDVKADMKKIEEEGANILIGTPGRLYDIMDRMDVLDFKSLEILILDEADRLLDMGFQKQINSIISLLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSVNNPAASQQPTSSRTPAGLQIEYMECEAERKPSQLVDILVKNRSKKMIIYFMTCACVDYWGLVLPRLSALKGFSLIPLHGKMKQAAREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAIVFLLPKEESYVEFLRVRRVPLQEGSCSNDASDVVPEIRSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMSELKQQSLSAEGFVPVEDINLEDIKFRDKSREKQRKQNLQAKKEAKQKETKPQKSNKNPKSAPVTRKKTAKQRRAQQSVEDEDELRQDYRMWKKLKKGTIDEDEYAKLTGTEELL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1367 590 Coils Coil 504 526 - -
Mibi08g1367 590 Gene3D - 5 228 IPR027417 -
Mibi08g1367 590 SMART DUF4217_3 414 477 IPR025313 -
Mibi08g1367 590 SMART ultradead3 35 235 IPR014001 -
Mibi08g1367 590 Pfam Domain of unknown function (DUF4217) 417 475 IPR025313 -
Mibi08g1367 590 Pfam DEAD/DEAH box helicase 40 214 IPR011545 GO:0003676|GO:0005524
Mibi08g1367 590 PANTHER RNA HELICASE 13 518 - -
Mibi08g1367 590 CDD SF2_C_DEAD 252 385 - -
Mibi08g1367 590 CDD DEADc_DDX55 27 225 - -
Mibi08g1367 590 MobiDBLite consensus disorder prediction 548 563 - -
Mibi08g1367 590 SMART helicmild6 291 376 IPR001650 -
Mibi08g1367 590 MobiDBLite consensus disorder prediction 503 530 - -
Mibi08g1367 590 Pfam Helicase conserved C-terminal domain 264 376 IPR001650 -
Mibi08g1367 590 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 171 179 IPR000629 -
Mibi08g1367 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 47 225 IPR014001 -
Mibi08g1367 590 FunFam RNA helicase 10 228 - -
Mibi08g1367 590 Gene3D - 253 489 IPR027417 -
Mibi08g1367 590 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 16 44 IPR014014 GO:0003724
Mibi08g1367 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 396 IPR027417 -
Mibi08g1367 590 MobiDBLite consensus disorder prediction 503 563 - -
Mibi08g1367 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 267 423 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1367 Mibi-ChrMibi08 29728779 29732895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1367 18 390 Eukaryotic Initiation Factors Gene Family AT1G72730 29.679 5.44e-46 166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1367 08 29728779 29732895 Mibi08g1367 08 29728779 29732895 ECH