Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1346 ATGGTTAGGTTTTTAACACCACAAGAGGAAGATATATTTCACAGAGAGGACTTTGATATGTGCGGTATCTCAAAAGTTAAACTTTCTCCCTCCAATAACGACATGGATAGCGAGTTTCGGAAGCAGAACTGCGATGTTCTCTGTAATATCTCAAGTCTGCTCGAGCTGTCTGCAACTGATGATCTTGAAACTTTCAGGAGGGAAGTAGAAGAGAAGGGTTCTGATGCAAACGAGGAAAGCTTTTGGTATGGAAGAAGAATAGGAACAAAGAAGATGGGATTGGAAAAGAGGACGCCTCTTATGGTTGCTTCTTTATTTGGAAGCACTGAGGTTCTGAAGTATATTATTGAAACAGGCAGAGTTGATGTGAACAAGGCCTGTGGTTCTGATAAGGCCACGGCTCTCCATTGCGCTGTTGCTGGTGGCTCTGAATCCTCACTTCAGATTGTTAAGCTCCTGCTTGATGCAAAGGCAGATCCTGATTGCCTTGATGCTAGTGGGAACAAGCCTGTTAATTTGATTGCTCCTGCTTTTAGTTCTTCATCCAGCCTGCGAAGGAAGGCGATGGAGTCGTTGCTGAGAGGTGATGAATTTGGTGGGGCAAGCCATCAAATTATTGAACAGGAGGCGGAGCAACAGAAAACTACACTGCCTTCGTTGTCATTGAAAGAAGCAGCTGAGAAGAAAGAATATCCTGTTGATATTTCCTTGCCTGACATAAACAATGGTATATATGGAACGGATGAGTTCAGGATGTACAGTTTCAAGGTGAAGCCGTGTTCAAGGGCGTACTCTCATGACTGGACCGAGTGTCCATTTGTTCATCCCGGGGAGAATGCAAGGAGGAGGGATCCCCGGAAGTATCCTTATAGCTGCGTTCCTTGCCCGGAATTCCGCAAGGGAAGCTGCCCAAAGGGGGATGCCTGTGAGTATGCTCATGGTGTTTTTGAGTCATGGCTCCATCCTGCTCAATACCGAACAAGGTTGTGTAAGGATGAGACTGGCTGCTCACGGAAAGTTTGCTTCTTTGCTCACAAACCTGAAGAATTGCGCCCTGTGTATGCTTCCACTGGTTCAGCAATGCCTTCCCCAAAATCCTTTTCAACTAGTGCGCTTGACGCAACAGTTATGAGTCCATTAGCTCTTAGCTCCTCATCTCTGCCAATGTCAACTGTCTCAACTCCGCCATTGTCTCCTTTGGCTGCTCCATCTCCCAAGGGTGGAAGCTTGTGGCAGAACAAAATAAACCTTACCCCACCATCCCTGCAGCTCCCGGGTAGCCGGCTAAAGGCGGCATTAAGTGCTAGGGATCTTGATTTGGAGATGGAGCTGCTTGGGCTAGAAAGTCCAGCTAACCATCACCACCACCAGCAGCTGATAGAAGAGATAGCTCGAATCTCTTCCCCATCTTTCCGGAACAAAGATTATAGTAGGATAGGCGATTTGAAGCCAACTAACCTTGATGACCTTTTGGGATCTGTTGATCCTTCTGTTCTTTCTCAACTCAATGGACTTTCACCACAACCTTCAATGCATACTCAGCTGCAATCACCAAATGGGCTTCAGATGCACCAAAACATGAACCATCTTCGCGCAAGCTATCCCACCAACCTTCCTTCCTCGCCTTCAAGAAATTCCTTGGGCTTAGGGTTTGACTCATCATCTGCTGTGGCAGCTGCAGTGATGAACTCCAGATCCGCAGCCTTTGCTAAGCGAAGTCAGAGTTTTATCGACCGTGGGGCGGTAACATCGCCCCACCATTTCGGGCAGTCTGCAGCAGCCTCCAACACTGCCAGTAGGGTTTCTTCTGCACTTTCAGATTGGAGATCCCCTGATGGGAAATTGGATTGGGGCATGAATGGAGATGAGCTGAATAAACTGAAGAAATCTGCTTCTTTTGGGTTCAGAAACAATGGAAACACAAATGCCGCCATGGCACGGCCTGAAAATTTTGAGCCAGATGTGTCATGGGTTAATTCATTGGTTAAAGATGTCCCCTCTGAGAGGCAGCAGCAGCAATTTGATCCAAGTAGAGAGATGGTTTCACCATGGGTGGAGCAGCTGTATAGAGAACATGAGCAGATAGTTGCATAA 2094 0.4704 MVRFLTPQEEDIFHREDFDMCGISKVKLSPSNNDMDSEFRKQNCDVLCNISSLLELSATDDLETFRREVEEKGSDANEESFWYGRRIGTKKMGLEKRTPLMVASLFGSTEVLKYIIETGRVDVNKACGSDKATALHCAVAGGSESSLQIVKLLLDAKADPDCLDASGNKPVNLIAPAFSSSSSLRRKAMESLLRGDEFGGASHQIIEQEAEQQKTTLPSLSLKEAAEKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCPKGDACEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSFSTSALDATVMSPLALSSSSLPMSTVSTPPLSPLAAPSPKGGSLWQNKINLTPPSLQLPGSRLKAALSARDLDLEMELLGLESPANHHHHQQLIEEIARISSPSFRNKDYSRIGDLKPTNLDDLLGSVDPSVLSQLNGLSPQPSMHTQLQSPNGLQMHQNMNHLRASYPTNLPSSPSRNSLGLGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRGAVTSPHHFGQSAAASNTASRVSSALSDWRSPDGKLDWGMNGDELNKLKKSASFGFRNNGNTNAAMARPENFEPDVSWVNSLVKDVPSERQQQQFDPSREMVSPWVEQLYREHEQIVA 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1346 697 ProSiteProfiles Ankyrin repeat profile. 130 165 IPR002110 GO:0005515
Mibi08g1346 697 SUPERFAMILY Ankyrin repeat 57 172 IPR036770 -
Mibi08g1346 697 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 294 314 IPR000571 GO:0046872
Mibi08g1346 697 ProSiteProfiles Zinc finger C3H1-type profile. 289 316 IPR000571 GO:0046872
Mibi08g1346 697 PANTHER UNKEMPT FAMILY MEMBER 55 665 IPR045234 -
Mibi08g1346 697 SMART c3hfinal6 324 347 IPR000571 GO:0046872
Mibi08g1346 697 SMART c3hfinal6 289 315 IPR000571 GO:0046872
Mibi08g1346 697 Pfam Ankyrin repeats (3 copies) 90 162 IPR002110 GO:0005515
Mibi08g1346 697 SMART ANK_2a 130 162 IPR002110 GO:0005515
Mibi08g1346 697 SMART ANK_2a 95 125 IPR002110 GO:0005515
Mibi08g1346 697 Gene3D - 290 352 - -
Mibi08g1346 697 FunFam Zinc finger CCCH domain-containing protein 66 247 315 - -
Mibi08g1346 697 Gene3D - 49 193 IPR036770 -
Mibi08g1346 697 ProSiteProfiles Ankyrin repeat region circular profile. 130 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1346 Mibi-ChrMibi08 29506685 29510024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1346 20 669 C2H2 Transcription Factor Family AT5G12850 40.286 6.77e-141 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi08g1346 Ank_2 6.9e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1346 08 29506685 29510024 Mibi08g1346 08 29506685 29510024 ECH