Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1298 ATGGAAGATGGGGTGTCAGGTTTTTGTATCAGAGCAGGAAGTTTTAGGAGAGGTGATAGTAATAATAATGGGAATAATAGTGGAAGTAGTGGAACTAAGTGTGGTCGTTGGAATCCCACAACAGAACAGGTTAAGCTTCTTACAGATTTGTTCATGTCCGGTCTGAGAACTCCAAGTACTGATCAGATTCAGAAGATCTCTTCTGAGCTTAGCTATTATGGAAAGATTGAGAGCAAGAATGTGTTTTATTGGTTTCAGAACCATAAAGCTAGAGAAAGACAGAAACGTCGCAAGGTCTCATTCCACCACCACAAAGATGATCTCAGTAAAAACATTCGTCCTCAAAACTCTATGTTATCTTCCACACAGAATTTGGGGGAGGTGGATCAAGTTGAAGAGCCAGCAGAGAGAGTGATGGAGACTCTTCAGCTGTTTCCCTTGAACTCCATTGGTGAATCATCAGAAGCAGAGAAAGTGAGGGCACAAGCAAATAAATATGGGGATGATGATGATGATAGTACAATGTTTCAGTCCCCAATGGGGGAACATTTGGATAACCCAGCATTAGATTTGCGCTTGAGCTTTCTGTAA 591 0.4146 MEDGVSGFCIRAGSFRRGDSNNNGNNSGSSGTKCGRWNPTTEQVKLLTDLFMSGLRTPSTDQIQKISSELSYYGKIESKNVFYWFQNHKARERQKRRKVSFHHHKDDLSKNIRPQNSMLSSTQNLGEVDQVEEPAERVMETLQLFPLNSIGESSEAEKVRAQANKYGDDDDDSTMFQSPMGEHLDNPALDLRLSFL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1298 196 MobiDBLite consensus disorder prediction 153 183 - -
Mibi08g1298 196 FunFam WUSCHEL-related homeobox 11 33 101 - -
Mibi08g1298 196 Pfam Homeodomain 34 94 IPR001356 GO:0003677
Mibi08g1298 196 MobiDBLite consensus disorder prediction 95 115 - -
Mibi08g1298 196 SMART HOX_1 32 99 IPR001356 GO:0003677
Mibi08g1298 196 Gene3D - 33 107 - -
Mibi08g1298 196 ProSiteProfiles 'Homeobox' domain profile. 30 95 IPR001356 GO:0003677
Mibi08g1298 196 MobiDBLite consensus disorder prediction 158 172 - -
Mibi08g1298 196 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 19 111 IPR044555 GO:0003700|GO:0099402
Mibi08g1298 196 SUPERFAMILY Homeodomain-like 30 102 IPR009057 -
Mibi08g1298 196 MobiDBLite consensus disorder prediction 16 38 - -
Mibi08g1298 196 CDD homeodomain 36 96 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1298 Mibi-ChrMibi08 28874532 28875396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1298 8 196 Wox Gene Family AT3G11260 52.764 1.46e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Mibi08g1298 Homeodomain 2.9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1298 08 28874532 28875396 Mibi08g1298 08 28874532 28875396 CCT
Mibi08g1298 08 28874532 28875396 Mibi08g1298 08 28874532 28875396 ECH