Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1285 ATGGAAACCCTGTACCCATCTTCTTTTATGCCAAATTCAGATTGGTATGTTCAAGATAGCATGAGCAGCACAGAATGGACAAGAGAAGAGAACAAAAGGTTCGAGAGTGCCCTTGCCATATATGATAAGGACACACCAGATAGGTGGCTGAAGGTGGCAGCCATGATCCCAGGAAAATCTGTGTATGATGTGATCAAGCAGTACAGAGAACTGGAAGAAGACATCGGAGAGATCGAAGCGGGTCGGGTCCCAATACCTGGGTATCTAGCTTCTTCTCCTTTCACCTTTGAGTTGGTTGATCACCAGAATTATGATGCATTCAGAAAGAGGCCTGTGAATTTCAAGGGTTCTTCTTCTGATCATGAGAGAAAGAAAGGGGTTCCTTGGACTGAAGAAGAACACAGGCGTTTTCTGATGGGGCTTCTGAAGTATGGTAAGGGAGATTGGAGGAACATATCAAGGAATTTTGTTGTGACAAAGACACCAACCCAGGTGGCAAGTCATGCTCAGAAGTACTACATAAGACAGAAGCTTTCTTCTGGAGGAAACAACAAAAGGAGACCTAGTATACACGACATAACCATTGTCAATCTCACAGAATCCACCAACACCCAGCAAGACAACAAGCCCCTTCAATTCAATGATCATCATCAGTCTCCTATGTTGTCACCACCACATCATCATCAGAAGCCAATTAATGATGATGGGGTTTTCATCAACCCTAGTTATTGTGACAGTTTCTCACATTCATCTTCTTCATCTGATATTGACTGTCTCCTTCATGAGGCTTTTGGTTTTAGGGCAAATTCTGGGGACTTTAGTAACCCAGCTGTCTTAGGTATTCATGCATTGTAA 855 0.4316 METLYPSSFMPNSDWYVQDSMSSTEWTREENKRFESALAIYDKDTPDRWLKVAAMIPGKSVYDVIKQYRELEEDIGEIEAGRVPIPGYLASSPFTFELVDHQNYDAFRKRPVNFKGSSSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSSGGNNKRRPSIHDITIVNLTESTNTQQDNKPLQFNDHHQSPMLSPPHHHQKPINDDGVFINPSYCDSFSHSSSSSDIDCLLHEAFGFRANSGDFSNPAVLGIHAL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1285 284 CDD SANT 25 71 IPR001005 -
Mibi08g1285 284 ProSiteProfiles Myb-like domain profile. 121 173 IPR001005 -
Mibi08g1285 284 ProSiteProfiles SANT domain profile. 129 177 IPR017884 -
Mibi08g1285 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 177 IPR017930 -
Mibi08g1285 284 SUPERFAMILY Homeodomain-like 24 75 IPR009057 -
Mibi08g1285 284 MobiDBLite consensus disorder prediction 200 219 - -
Mibi08g1285 284 FunFam transcription factor MYB1R1 127 178 - -
Mibi08g1285 284 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 124 176 IPR006447 GO:0003677
Mibi08g1285 284 CDD SANT 128 172 IPR001005 -
Mibi08g1285 284 FunFam Transcription factor SRM1 18 85 - -
Mibi08g1285 284 ProSiteProfiles SANT domain profile. 21 76 IPR017884 -
Mibi08g1285 284 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 227 IPR043363 -
Mibi08g1285 284 SMART sant 22 74 IPR001005 -
Mibi08g1285 284 SMART sant 125 175 IPR001005 -
Mibi08g1285 284 ProSiteProfiles Myb-like domain profile. 18 72 IPR001005 -
Mibi08g1285 284 MobiDBLite consensus disorder prediction 200 235 - -
Mibi08g1285 284 Gene3D - 127 178 - -
Mibi08g1285 284 SUPERFAMILY Homeodomain-like 123 177 IPR009057 -
Mibi08g1285 284 Pfam Myb-like DNA-binding domain 25 70 IPR001005 -
Mibi08g1285 284 Pfam Myb-like DNA-binding domain 128 172 IPR001005 -
Mibi08g1285 284 Gene3D - 18 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1285 Mibi-ChrMibi08 28676820 28678045 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mibi08g1285 Myb_DNA-binding 1.2e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1285 08 28676820 28678045 Mibi08g1285 08 28676820 28678045 CCT
Mibi08g1285 08 28676820 28678045 Mibi08g1285 08 28676820 28678045 ECH
Mibi11g0164 11 2490057 2491308 Mibi08g1285 08 28676820 28678045 ECH
Mibi08g1285 08 28676820 28678045 Mibi11g0164 11 2490057 2491308 ECH