Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1270 ATGAAAGTCACCGCCGCCTTATCAGATAGTCATCGCCGGTCGTTGTGTTGTGGTGTGGGTTTAGTTGTCGTCTTTTTAGTGAGTCATCATCAACAAGAGAGCAAAAACAAAACCCTAGTTTCAGAGAAGCCTTGCGGCACAGAGAAAATCTCAAAAATGGGACGAGTAATTCGCGCTCAACGTAAGGGTGCAGGCTCCGTCTTCAAATCCCACACTCACCACCGTAAAGGCCCCGCCAGATTTCGCAGCCTCGATTTCGGCGAACGAAATGGTTACCTAAAAGGTGTAGTCACCGACATCATCCATGATCCTGGTCGTGGTGCTCCTCTTGCGAAGGTTACTTTCCGACATCCTTTTAGGTACAAGAAGCAGCAAGAGCTTTTTGTTGCCGCCGAAGGTTTGTACACTGGTCAATTCATTTACTGCGGTAAGAAAGCCAATCTTGTCGTAGGTAATGTCTTGCCCATTAGGTCCATTCCTGAAGGAGCTGTTATTTGCAATGTGGAGCATCATGTTGGTGACCGTGGCGTCTTCGCTAGGTGTTCTGGTGATTATGCTATTGTTGTCAGTCATAATCCTGATAATGATACATCTAGGATCAAGCTTCCGTCCGGGGCAAAGAAGATTGTTCCAAGTGGTTGTCGTGCCATGATTGGGCAGGTTGCAGGTGGAGGTAGAACTGAGAAGCCTCTTCTGAAAGCTGGTAATGCTTATCACAAGTTTAGGGTGAAGAGGAATTGCTGGCCTAAGGTACGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCATGGAGGAGGTAACCACCAGCATATTGGTCATGCTAGTACCGTCAGGCGTGATGCGCCTCCAGGGCAAAAGGTTGGTCTTATTGCCGCCAAGAGGACCGGTCGTCTTAGGGGTCAAGCTGCCGCCACTGCTGCTAAAGCTGATAAGACTGCCTAG 942 0.4883 MKVTAALSDSHRRSLCCGVGLVVVFLVSHHQQESKNKTLVSEKPCGTEKISKMGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKKQQELFVAAEGLYTGQFIYCGKKANLVVGNVLPIRSIPEGAVICNVEHHVGDRGVFARCSGDYAIVVSHNPDNDTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADKTA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1270 313 FunFam 60S ribosomal protein L8 142 221 - -
Mibi08g1270 313 PANTHER RIBOSOMAL PROTEIN L2 46 307 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mibi08g1270 313 Gene3D - 142 221 IPR014722 -
Mibi08g1270 313 SMART Ribosomal_L2_2 63 142 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mibi08g1270 313 MobiDBLite consensus disorder prediction 262 282 - -
Mibi08g1270 313 ProSitePatterns Ribosomal protein L2 signature. 249 260 IPR022671 GO:0003735|GO:0005840|GO:0006412
Mibi08g1270 313 Pfam Ribosomal Proteins L2, RNA binding domain 65 142 IPR022666 GO:0003735|GO:0005840|GO:0006412
Mibi08g1270 313 Gene3D Ribosomal protein L2, domain 3 222 299 IPR014726 -
Mibi08g1270 313 SUPERFAMILY Translation proteins SH3-like domain 151 298 IPR008991 -
Mibi08g1270 313 Gene3D - 53 138 IPR012340 -
Mibi08g1270 313 SMART Ribosomal_L2_C_2 148 283 IPR022669 GO:0003735|GO:0005840|GO:0006412
Mibi08g1270 313 FunFam 60S ribosomal protein L2 53 138 - -
Mibi08g1270 313 SUPERFAMILY Nucleic acid-binding proteins 52 149 IPR012340 -
Mibi08g1270 313 FunFam 60S ribosomal protein L2 222 299 - -
Mibi08g1270 313 Pfam Ribosomal Proteins L2, C-terminal domain 150 277 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1270 Mibi-ChrMibi08 28479320 28482314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1270 53 310 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.248 0.0 501