Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1236 ATGGAGGGATCTCATCATCAGCAGCATCACTACTTGATGTGGCTGAAGAGGAAGCAAATGTTAATGAAGTCATCATCATGGGAAGGGAGCGCTTTTGCAGAAGATGCAGCTAGGATTCTTGGTGGATACGTATGGCCTCCAAGATCTTACACTTGCACTTTCTGCAAAAGAGAGTTCAGGTCTGCCCAAGCTCTTGGTGGTCATATGAATGTTCATAGGAGAGATAGAGCCAGGCTCAAACAACACGCCCAACAACAACAACAACAAAGTAGTAAGAGATCTTCTTCTGATTCTTCAGAGCTCATCCTCCTCAATGATAATAATGGAAGGCAAGAAGAAGATAATAACAATTATTATGTTGAAACAGACTTGTCCATGGGATTACTGCCTCCATCATCATCATCATCATCACCTGAAGAAGGTTTAAGATGTAAGAGAACTAAAATCACTTCCAATAATATTTCTTCTACAGTAATGCAGCTTCCTGCAGTCTTCATTCATAAGCCTAAAATGGAAGACTTGGATCTTGAACTCAGGCTGGGGGAATTACCACAGAAAGTTAAGTAG 567 0.4109 MEGSHHQQHHYLMWLKRKQMLMKSSSWEGSAFAEDAARILGGYVWPPRSYTCTFCKREFRSAQALGGHMNVHRRDRARLKQHAQQQQQQSSKRSSSDSSELILLNDNNGRQEEDNNNYYVETDLSMGLLPPSSSSSSPEEGLRCKRTKITSNNISSTVMQLPAVFIHKPKMEDLDLELRLGELPQKVK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1236 188 MobiDBLite consensus disorder prediction 74 100 - -
Mibi08g1236 188 Gene3D Classic Zinc Finger 47 111 - -
Mibi08g1236 188 SUPERFAMILY beta-beta-alpha zinc fingers 47 77 IPR036236 -
Mibi08g1236 188 PANTHER OS07G0101800 PROTEIN 23 182 - -
Mibi08g1236 188 SMART c2h2final6 50 72 IPR013087 -
Mibi08g1236 188 MobiDBLite consensus disorder prediction 82 100 - -
Mibi08g1236 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Mibi08g1236 188 Coils Coil 69 89 - -
Mibi08g1236 188 Pfam C2H2-type zinc finger 50 74 - -
Mibi08g1236 188 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1236 Mibi-ChrMibi08 27993002 27993568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1236 13 85 C2H2 Transcription Factor Family AT2G37740 67.123 8.42e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi08g1236 zf-C2H2_6 3.9e-07 CL0361