Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1232 ATGGCGAGTCGGTGGTGGGCTGGCAACGTGGCAATGAGACCAACAACAAAAGATCCTCTGTCATCTTCTCCATCACTTCATCTCCGAAGCCCAGAAGATGACCAAACCGGTTTGAACCGGTTCGGCCCGGTCCGTATGCAAGACTTCCTAGAAAGCACAAATAACAACACCACAACTCCAAGCAATAGCAGCAACAGCAACACTAATAACCCCAACACAAACACCACCTCCCAGAGCCACATCGCCGCCGACGAAGGCGACAGCGGTCGCGACGCCACCGATGATCACAACAACCTCCAGGGCAGCCACGACAGCGCCACGGAGCCCGGAAAGGACCGCCGGCCCCGGGGCCGCCCGCCCGGGTCGAAGAACAAGCCGAAGGCGCCGGTCATCGTCGCGAAGGAGAGCCCGAATGCCCTCCGGAGCCACGTGTTGGAGATCTCCAGCGGCGGCGACGTCGCCGAGAGCCTCTCGACTTTCGCGAACCGCCGCCACCGCGGCGTGTCGGTGCTCAGCGGCAGCGGCATTGTCACCAATGTCACCCTCCGGCAGCCGGCGGCGCCCGGCGGGGTCATCACGCTGAACGGGAGGTTCGAGATTTTGTCGCTGTCCGGCGCGTTCTTGCCGGCCCCGTCGCCGCCAGGGGCGACCGGGCTGACCGTGTATTTAGGCGGCGGGCAAGGGCAGGTTGTTGGTGGGGCCGTGGTGGGCCCATTGGTGGCATCAGGGCCTGTGTTGGTGATTGCTGCTACATTTGCTAATGCTACTTATGAGAGGTTACCATTAGAAGATGATCCTATATCTGGGGAAGAGGTTGATGTGAAAAATCAGGGGAAGCAGCAATCTGGAGTGAATAATTCAGCTACTTCTTCCGGGGCTCTTGCTTCAAATTCTCAAGGTTTTAGTGAACAGGTGTCAATGCCTGTGTTTAGTAATATGCCTCCTAATTTGGTTGTACCAAATAGTGATCAACAAATGCAACATGATGTTTTCTGGGGGGGCCCTGCTCGTCATCCTCCTTCTTACTGA 1029 0.5773 MASRWWAGNVAMRPTTKDPLSSSPSLHLRSPEDDQTGLNRFGPVRMQDFLESTNNNTTTPSNSSNSNTNNPNTNTTSQSHIAADEGDSGRDATDDHNNLQGSHDSATEPGKDRRPRGRPPGSKNKPKAPVIVAKESPNALRSHVLEISSGGDVAESLSTFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGVITLNGRFEILSLSGAFLPAPSPPGATGLTVYLGGGQGQVVGGAVVGPLVASGPVLVIAATFANATYERLPLEDDPISGEEVDVKNQGKQQSGVNNSATSSGALASNSQGFSEQVSMPVFSNMPPNLVVPNSDQQMQHDVFWGGPARHPPSY 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1232 342 MobiDBLite consensus disorder prediction 274 298 - -
Mibi08g1232 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 253 IPR005175 -
Mibi08g1232 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 265 - -
Mibi08g1232 342 MobiDBLite consensus disorder prediction 1 129 - -
Mibi08g1232 342 CDD DUF296 141 223 IPR005175 -
Mibi08g1232 342 MobiDBLite consensus disorder prediction 84 98 - -
Mibi08g1232 342 FunFam AT-hook motif nuclear-localized protein 140 267 - -
Mibi08g1232 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 67 334 IPR014476 GO:0003680
Mibi08g1232 342 Gene3D - 140 279 - -
Mibi08g1232 342 PIRSF ESCAROLA 50 342 IPR014476 GO:0003680
Mibi08g1232 342 MobiDBLite consensus disorder prediction 15 32 - -
Mibi08g1232 342 MobiDBLite consensus disorder prediction 48 83 - -
Mibi08g1232 342 ProSiteProfiles PPC domain profile profile. 137 275 IPR005175 -
Mibi08g1232 342 MobiDBLite consensus disorder prediction 268 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1232 Mibi-ChrMibi08 27920379 27921407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1232 1 342 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 51.714 2.04e-77 238