Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1219 ATGATCCAAAACCAACAACCCCTCCGTCCTTCCCTAAGAAGACCTCGCCAAAACAACACCTCCATGGCCAACCCCGTTGTCGTCCTACGTGGAAACCACGATTTCCCACATGGTCGTAGGTTTGATCTCTACCATGAAGATGTCTCTGGTCTCCGTCCTCTGCCTCCTAACATGGCAGAGGTAATTCTAGGATCTGGGATTGACAGGCTTTTGGATCAACTTTCTCAGATTGAGATGAATGGGGTTTCAAGATACGAACCGCCGCATCTTCCTGTTTCGAAGGCCGCCATCGATTCGTTACCGACGGTGGAGATTTGTGAGGATCATCTAACGACGGAATCTCACTGTGCGGTTTGTATGGAATCTTTTGAAGTGGGAGTGATCGCTCGTGAATTGCCTTGCAGGCATATTTATCATTCGGACTGTATCTTACCGTGGCTTTCTCTCAGGAATACTTGCCCTGTTTGCAGGCAGGAGCTTCCGGTGGATAATCATAATGGTAATTCTGTGTATTGGAATAATGGTGATGTTGATGATGAGAATGTGGGGTTGACTATTTGGAGGCTTCCTGGTGGTGGTTTTGCGGTGGGGAGATTTGCTGGTGCTGGGAGGAGAAGTGAGATTCCTGATAATGATGATCGTGAGATTCCTGTTGTGTATACAGAAATGGATGGTGGTGTTATTGGAAATGGCGGCGAACCTAGGAGGGTGACTTGGTCAACGACCATGGAAGGTCGAAGAAGAGAAAGTGTTGGTGGTGGTGGTGGGGGTGGAAGATTGAGGAAAATGTTTAGAAATCTTTTTGGTTGTTTCAATCCTAGACATCGGATTCGATTCTCTGCTTCTTTGTCTTCATCTTCATCTTCTTCACCAGAACCTCGTTTTTCAAGGAGTATTAATAATAGTGCTTCTCGTCCTCGACCTATTGTTAATAATACTTCAATGCGTTCTCGAAGAACTTGGTCTCTGGATGGCAATGGTGGAACCAGACCTTGGTAA 999 0.4625 MIQNQQPLRPSLRRPRQNNTSMANPVVVLRGNHDFPHGRRFDLYHEDVSGLRPLPPNMAEVILGSGIDRLLDQLSQIEMNGVSRYEPPHLPVSKAAIDSLPTVEICEDHLTTESHCAVCMESFEVGVIARELPCRHIYHSDCILPWLSLRNTCPVCRQELPVDNHNGNSVYWNNGDVDDENVGLTIWRLPGGGFAVGRFAGAGRRSEIPDNDDREIPVVYTEMDGGVIGNGGEPRRVTWSTTMEGRRRESVGGGGGGGRLRKMFRNLFGCFNPRHRIRFSASLSSSSSSSPEPRFSRSINNSASRPRPIVNNTSMRSRRTWSLDGNGGTRPW 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1219 332 Pfam Ring finger domain 115 157 IPR001841 -
Mibi08g1219 332 SUPERFAMILY RING/U-box 96 163 - -
Mibi08g1219 332 CDD RING-H2_RNF126_like 116 157 - -
Mibi08g1219 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 163 IPR013083 -
Mibi08g1219 332 MobiDBLite consensus disorder prediction 1 23 - -
Mibi08g1219 332 MobiDBLite consensus disorder prediction 282 324 - -
Mibi08g1219 332 FunFam E3 ubiquitin-protein ligase RING1-like 76 163 - -
Mibi08g1219 332 Pfam Protein of unknown function (DUF1117) 182 294 IPR010543 -
Mibi08g1219 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 49 161 - -
Mibi08g1219 332 SMART ring_2 116 156 IPR001841 -
Mibi08g1219 332 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
Mibi08g1219 332 MobiDBLite consensus disorder prediction 282 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1219 Mibi-ChrMibi08 27669383 27670381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1219 39 166 C3H Transcription Factor Family AT5G01980 38.346 9.66e-22 94.0