Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1218 ATGACTGCAATAGTATTGTACACCGTATTCCAGTCAACTAGTGGAGTCTCAATTCAATTTTCACAAGCAAGCAGAGCCATGAGTTTTGTTTTGAGAGGAACAAGAGCAGACATAGAAAGCGGATTTCCTGGATATATTCCTGAGAGGCATGCATTGCGTGTTCATGCAGCACGACCTACTAATTCCAATTCACTTACTTTTCTTGTCACAGTTCTCCTGTTATTCATGATTCTGAACTCTCACCAGATGTCACCAAATTTTCTGCTTTGGCTCGTCCTAGGTGTCTTCTTGATGGCTACAATGTTGAGGATGTATGCAACTTGTCAGCAGCTTCAAGCTGAGGCTCATGCCCATGCAGCAGCAGGCAGTGGTGGCCTTCTTGGGCACACTGAAGTACGATTGCATATGCCACCATCAATGGCACTTACCACCCGAGGACGTCTACAAGGCCTCAGACTTCAGCTTGCGCTTCTTGACCGGGAGTTTGATGATTTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGCTCCGCCTGCACCTTCTATGACTGATGAAGAGATAAATGCTCTTCCTGTTCACAAGTACAAGGGTTCTGGTCTCCAAAACAGGAAATCCTCGTTGCAACAGACCTCATCTTCCACCTTTGCTGAGAAGAAGCTAGATACATCAAATGCAGTTGGTAGTACAAAAGCCTCTGATGATGAACTGACCTGCAGTGTATGTTTGGAGCAAGTTAATGTTGGAGATCTACTCCGTAGCTTGCCCTGTTTACATCAGTTTCATGCCAATTGCATCGACCCATGGCTGCGGCAACAAGGTACGTGTCCTGTATGTAAATTCAGAGCAGGATCCACATGGCATGAAGGTGAACAGAATGAAGTTGATGCTTCAGATATGGTTTGA 909 0.4477 MTAIVLYTVFQSTSGVSIQFSQASRAMSFVLRGTRADIESGFPGYIPERHALRVHAARPTNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAEAHAHAAAGSGGLLGHTEVRLHMPPSMALTTRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPPAPSMTDEEINALPVHKYKGSGLQNRKSSLQQTSSSTFAEKKLDTSNAVGSTKASDDELTCSVCLEQVNVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSTWHEGEQNEVDASDMV 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1218 302 ProSiteProfiles Zinc finger RING-type profile. 240 281 IPR001841 -
Mibi08g1218 302 SUPERFAMILY RING/U-box 235 284 - -
Mibi08g1218 302 CDD RING-H2_PA-TM-RING 239 281 - -
Mibi08g1218 302 PANTHER TARGET OF ERK KINASE MPK-1 28 286 - -
Mibi08g1218 302 SMART ring_2 240 280 IPR001841 -
Mibi08g1218 302 Pfam Ring finger domain 239 281 IPR001841 -
Mibi08g1218 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 285 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1218 Mibi-ChrMibi08 27660447 27663671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1218 27 302 C3H Transcription Factor Family AT3G55530 74.007 1.93e-138 390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1218 08 27660447 27663671 Mibi08g1218 08 27660447 27663671 ECH