Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1194 ATGGACATTTCTTCTTCTCCTTCTTCATCATCTTCATCTTCTTCATCGTCGTCGGGGGCCCTGAGCCCAGAGTCAAATCTGGAGGCGGAGAGTCCGCGAAGCCCCCTGGCGGTGCGGCGAGCCCTGCAGCTGGTGCAATCGGAGGAGCCGTCTCTGATGCTCCAAGCCGCCCGTGATATCCGCCGACTCACCAAAACCTCCCAACGTTGTCGCCGCCAGCTCTCTCTCGCCGTCCCTCCCCTCGTCTCCATGCTCCGTTTCCACCCCCCCGACTCCCACGAGCCCGCTCTCCTCGCCTTGCTCAACCTCGCCGTCAAAGACGAAAAGAACAAAATCAGCATTGTGGAAGCTGGTGCTTTAGAACCGATAATTTCTTTCCTGAAGTCACAAAACACAAACCTGCAAGAGTGCGCCACTGCATCTCTGCTCACTTTATCCGCCTCTGCAACTAACAAACCGATCATTTGTGCTTCTGGAGCCATTCCTCTTCTTGTGGAGATCCTCAGAGATGGAAGCACACAAGCTAAAGCTGATGCAGTAATGGCTCTCTCCAATCTATCCACCCACCCTGACAACCTCAGCGCCATTCTTGAAACGAATCCAATCCCTTTCATAGTTGATCTTCTCAAAACCTGTAAGAAATCCTCGAAGACAGCCGAGAAGTGCTGTGCTTTGATAGAATCCCTGGTGGGCTTTGATGAGGGCAGGATCGCCTTGACATCTGAAGAAGGTGCAGTTCTCGCTGTGGTGGAGGTTCTCGAAAATGGCAACCTCCAGAGCCGGGAGCATGCTGTTGGAGCGCTGTTGACAATGTGTGAAAGCGATCGTTGTAAATACAGAGAGCCGATTCTCAGGGAAGGCGTGATCCCAGGACTTCTGGAGCTTACCGTTCAGGGAACACCCAAGTCTCAGTTAAAAGCCCGCAACCTCTTGCAACTACTGAGAGAAACTCCTTATCCCAGATCTGAAATCCAACCAGACACTCTTGAGAACATAGTTTGCAATATTATATCGCAGATTGATGGAGATGATCAGTCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTGAGACATCTACAGCAAAGGGCTCTTGTGTTCACCCCCACAAGTGATAGGCCTATTACTAAATGTGCTTCTGAGGTGTCTTCAAAATGA 1182 0.5102 MDISSSPSSSSSSSSSSSGALSPESNLEAESPRSPLAVRRALQLVQSEEPSLMLQAARDIRRLTKTSQRCRRQLSLAVPPLVSMLRFHPPDSHEPALLALLNLAVKDEKNKISIVEAGALEPIISFLKSQNTNLQECATASLLTLSASATNKPIICASGAIPLLVEILRDGSTQAKADAVMALSNLSTHPDNLSAILETNPIPFIVDLLKTCKKSSKTAEKCCALIESLVGFDEGRIALTSEEGAVLAVVEVLENGNLQSREHAVGALLTMCESDRCKYREPILREGVIPGLLELTVQGTPKSQLKARNLLQLLRETPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVFTPTSDRPITKCASEVSSK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1194 393 MobiDBLite consensus disorder prediction 1 29 - -
Mibi08g1194 393 Pfam Armadillo/beta-catenin-like repeat 108 142 IPR000225 GO:0005515
Mibi08g1194 393 Pfam Armadillo/beta-catenin-like repeat 151 187 IPR000225 GO:0005515
Mibi08g1194 393 PANTHER U BOX DOMAIN-CONTAINING 27 321 - -
Mibi08g1194 393 MobiDBLite consensus disorder prediction 1 33 - -
Mibi08g1194 393 Gene3D - 23 374 IPR011989 -
Mibi08g1194 393 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Mibi08g1194 393 SUPERFAMILY ARM repeat 40 342 IPR016024 -
Mibi08g1194 393 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 160 IPR000225 GO:0005515
Mibi08g1194 393 SMART arm_5 148 188 IPR000225 GO:0005515
Mibi08g1194 393 SMART arm_5 189 231 IPR000225 GO:0005515
Mibi08g1194 393 SMART arm_5 107 147 IPR000225 GO:0005515
Mibi08g1194 393 SMART arm_5 66 105 IPR000225 GO:0005515
Mibi08g1194 393 SMART arm_5 232 273 IPR000225 GO:0005515
Mibi08g1194 393 FunFam U-box domain-containing protein 4 23 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1194 Mibi-ChrMibi08 27252214 27255470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1194 38 315 U-box Gene Family AT2G23140 33.214 1.05e-36 139
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1194 08 27252214 27255470 Mibi08g1194 08 27252214 27255470 CCT
Mibi08g1194 08 27252214 27255470 Mibi08g1194 08 27252214 27255470 ECH