Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1193 ATGAAGCTTGAGTACCACAAGTCAGTGATTGAGGAAGAAGATGGGTTCAGCAATGGTGGCTCTGCCATAACCCATCATTCACCTTCTGCTCCTATGAGTGGAACTGGAAATGGGTTTGTTTATAAGGCCACAAGCAATCATCTTTCTGAGGAATCACAATCTCTCATCAACTTCAATAATGGTGGCGAATCTTTGCTTAGCTTTCAGCAGAAAGAATTCTGTTTGTGGGAGAATGATAATGGTTTGCATCATCAGTGGAATCAGATTATTAGCCCAACCAGAAGCAATAATTCAGACCCTTCAAGACTGATTCAGGATTTCAATTGCATTCAAACTGCTAGTGGCTATGGAAGAGGATCATCAAAAGAGAAGCAGCAGCATCAGCAGCAAGGTGAGAGTTCATCATCATCATATGGGTGGCTATACTCTGAACCAAATGATATTAATAGCCTTCAAGATTCTTCACCAACAGCAAAAGAAGCATCCTTCAATAAGCGTCTTTCAATGGGAGAGAGCATGCATGTCTCAAAGAAGCAATGCACTACTGCTAGTAAAACTCCAAAACAAATTGCAAAGTCATCTAACTCATCTAAGGATCCTCAGAGTATAGCAGCCAAGAACAGAAGAGAGAGGATAAGTGAGCGACTCAAGATACTTCAAGAACTAGTCCCTAATGGCTCCAAGGTTGATTTGGTGACCATGCTGGAGAAAGCAATTAGTTATGTGAAGTTCCTTCAATTGCAAGTGAAGGTACTGGCAACTGATGAATTTTGGCCAGTGCAAGGAGGAAAAGCACCTGATATTTCTCAAGTAAAAGAAGCCATTGATGCAATTCTTTCATCCCAGAGAGACAGAAACTCATCAACCTCAAATCAACCGAAATGA 885 0.4113 MKLEYHKSVIEEEDGFSNGGSAITHHSPSAPMSGTGNGFVYKATSNHLSEESQSLINFNNGGESLLSFQQKEFCLWENDNGLHHQWNQIISPTRSNNSDPSRLIQDFNCIQTASGYGRGSSKEKQQHQQQGESSSSSYGWLYSEPNDINSLQDSSPTAKEASFNKRLSMGESMHVSKKQCTTASKTPKQIAKSSNSSKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVKEAIDAILSSQRDRNSSTSNQPK 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1193 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 255 IPR036638 GO:0046983
Mibi08g1193 294 Pfam Helix-loop-helix DNA-binding domain 203 246 IPR011598 GO:0046983
Mibi08g1193 294 SMART finulus 202 251 IPR011598 GO:0046983
Mibi08g1193 294 MobiDBLite consensus disorder prediction 174 208 - -
Mibi08g1193 294 CDD bHLH_AtIND_like 197 259 - -
Mibi08g1193 294 FunFam Transcription factor bHLH83 194 253 - -
Mibi08g1193 294 MobiDBLite consensus disorder prediction 174 202 - -
Mibi08g1193 294 MobiDBLite consensus disorder prediction 114 139 - -
Mibi08g1193 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Mibi08g1193 294 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 31 261 IPR045843 GO:0003700|GO:0006355
Mibi08g1193 294 Gene3D - 191 253 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1193 Mibi-ChrMibi08 27226587 27227987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1193 38 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 46.468 3.03e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi08g1193 HLH 9.4e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1193 08 27226587 27227987 Mibi08g1193 08 27226587 27227987 CCT
Mibi08g1193 08 27226587 27227987 Mibi08g1193 08 27226587 27227987 ECH