Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1157 ATGGCTACTTCATTGGATATGTCACTTGATGATAGGATAAAAACCAGAAGTAACAGGGAGAGGGGCAGAGGGCGTGGTAGAGCCCCACGTGGCCGTGGAGCAGGTCAGAATCGTGGTGGTGGAAGAATGCCTGGTGCAGTTCGTAGAGCTCCTCTTGGAATTAATTCTCGGCCATCTGCTTATGCCATTGCCAAGTCCCTTCGCAGAACCAGGCGTTTTCCTTGGCAGCATGATCTGTTTGAAGATAGCCTAAAAGCTGCAGGGATACAAGGAGTAGAAGTAGGCACAAAGCTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTTTCGCTGAGATTGGACACTTGAAGCGCTATGCAGTTCACTATGACAGAAATGGACGTCCTAGTGGTTCAGCTGAGGTTGTCTACACTAGAAGGAGTGATGCATTTGCAGCGCTTAAACGATACAATGATGTGCTTTTGGATGGAAGGCCCATGAAGATTGAGGTTGTTGGTTCCAATTCGGAATTGCCTGTATCGGCTCGTGTGAATGTTTCTGGTATAAATGGGCAGAGGAAGAGGACAGTTGTCATGACGCCTGGTGGTCGACCTGGAGGAAGAGCTGGACCGCCTGCTATGTTTAATCGTGGTGCAGGTTGGGGACGTCGTGGTGGTGGTGGTGGAAGGAGTGGTGGCGGAGGTATGCGAGGTCGAGGTGGGGGACGAGGTAGGGGTCGAGGTCGTGGACGTGGGAAGAAGGATGCAGTTGATAAGTCTGCAGAGGATCTTGACAAGGAACTGGAGACTTATCATGCTGAGGCCATGCACATCTCTTGA 837 0.5042 MATSLDMSLDDRIKTRSNRERGRGRGRAPRGRGAGQNRGGGRMPGAVRRAPLGINSRPSAYAIAKSLRRTRRFPWQHDLFEDSLKAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFAEIGHLKRYAVHYDRNGRPSGSAEVVYTRRSDAFAALKRYNDVLLDGRPMKIEVVGSNSELPVSARVNVSGINGQRKRTVVMTPGGRPGGRAGPPAMFNRGAGWGRRGGGGGRSGGGGMRGRGGGRGRGRGRGRGKKDAVDKSAEDLDKELETYHAEAMHIS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1157 278 SMART FoP_duplication_2 201 278 IPR025715 -
Mibi08g1157 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Mibi08g1157 278 CDD RRM_THOC4 96 169 - -
Mibi08g1157 278 MobiDBLite consensus disorder prediction 1 52 - -
Mibi08g1157 278 SMART rrm1_1 97 169 IPR000504 GO:0003723
Mibi08g1157 278 MobiDBLite consensus disorder prediction 250 278 - -
Mibi08g1157 278 MobiDBLite consensus disorder prediction 195 278 - -
Mibi08g1157 278 Gene3D - 91 173 IPR012677 -
Mibi08g1157 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Mibi08g1157 278 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 276 - -
Mibi08g1157 278 MobiDBLite consensus disorder prediction 9 24 - -
Mibi08g1157 278 Pfam C-terminal duplication domain of Friend of PRMT1 219 272 IPR025715 -
Mibi08g1157 278 SUPERFAMILY RNA-binding domain, RBD 22 170 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1157 Mibi-ChrMibi08 26737457 26740204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1157 61 235 Eukaryotic Initiation Factors Gene Family AT1G49760 28.042 3.95e-11 61.2