Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1128 ATGACTAGAAGAAAGGTGAAACTCGCTTTCATTGCCAATGAATCAGCAAGGAAGACAACCTACAAGAAGAGGAAAAATGGTGTGGTGAAGAAGGCAGGTGAATTGGTCACCCTTTGTGGGGTTGAGGCATGTATGATAATTTATAGCCCTTATGAACCTGAGCCTGAGATCTGGCCTTCCCCCAGGGGAGTCCAAGGCACAATCCTGAGGTTTAGGCAAATGCCGGAAATGGAACAATGTAAGAAGATGTTGAACCAGATGAGCTTCACGAGGGAGCGGATCGAGAAAATCAGCGAGCAAGTAAAGAAGGTAAGGAAGAACAACCGGGAGAAGGAGCTGACCCAGATCATGTATCACTACATGAGCACTGGGATTTTCCTGCAGAATATGACTATCAATGATTTTCATGACATGAAATGGCTGATTGAGCACAACTTGAGGGATGTCAATAGGAAGGTGGAGGCAATGAAGATTGAGAGGCCTCAGAATGAAATCCAAAACCAAGGTGAGGAACAAGCACAAGCAGATATGGAGATTAACATAAGCACATTGCAGAGGCAACAGAACTTTATGGAATTGATGAACTGTGCTGGGGATGAGACACTTCCAATTGGAGAGGCCAATCTCTATAATGCTTGGCCTGGCCCTTTTTACTTTTGA 660 0.447 MTRRKVKLAFIANESARKTTYKKRKNGVVKKAGELVTLCGVEACMIIYSPYEPEPEIWPSPRGVQGTILRFRQMPEMEQCKKMLNQMSFTRERIEKISEQVKKVRKNNREKELTQIMYHYMSTGIFLQNMTINDFHDMKWLIEHNLRDVNRKVEAMKIERPQNEIQNQGEEQAQADMEINISTLQRQQNFMELMNCAGDETLPIGEANLYNAWPGPFYF 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1128 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi08g1128 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi08g1128 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi08g1128 219 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mibi08g1128 219 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Mibi08g1128 219 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mibi08g1128 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mibi08g1128 219 PANTHER MADS BOX PROTEIN 3 139 - -
Mibi08g1128 219 Coils Coil 80 114 - -
Mibi08g1128 219 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mibi08g1128 219 Gene3D - 13 124 IPR036879 GO:0003677|GO:0046983
Mibi08g1128 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1128 Mibi-ChrMibi08 26208909 26209568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1128 1 157 Type I MADS-box Gene Family AT5G48670 48.408 2.36e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi08g1128 SRF-TF 5e-17 No_clan