Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1126 ATGACGCTGCCTCGCCACACGCTTCTCCTACTGACTCATTCCCAACTCATCAAACAATCTCACCTTACGTCTGCTCCAACCTTCGAACCAACCAATCCCAAATCCCAATCTTTCTTTCCTTTCCTCAACTTTTTTGAATCTTTCAACGGTCAACGTTCAACACGTCCATTCCTCTCACGGTTCAAAAAACTTCAAATCGAATACTTCACTATTCATTCAACGTCTACTCTAACAAACGTACATCAATTTTCACTAAGAAAGGTTGAATCTTTTTGGTTTATCGAAGATTGTACAAGCATGGTTTTGTCAGGGACGCTTAGGAAAGTGTTCAGACGTGCCCACAAAGAGAAATCCCTTCCTGGCTGCGGCGAACTCGACTTGGAACCTGTGATTCCGACACATTTCAGGTGTCCTGTGAGCCTTGAGCTGATGAAAGATCCGGTGACACTGTCCACAGGAATCACCTACGACAGGGACAGCATAGAGAGGTGGATTGAATCTGGGAACAACACTTGCCCTGTGACCAAGCAGGTTCTTTTGACCACAAACATGATCCCAAATCACACGATTAGGAGAATGATCCAAGATTGGTGTGTGGAGAATCAGTCTTATGGGATTGAAAGAATCCCCACTCCTAGGATCCCCATCGCTCCGTACGAGGTTTCTGATACTTGTTCGAGGATTGTTGCCGCAACTCGTAATGGGGATGTTAGAAAGTGTCAAGATTTGGTGGGGAAGATTAAGAATTGGGGTAAAGAGAGTGAGAGGAATAAGAGGTGTGTGGTGGAAAATGGTGCTTGTGTTGTGTTAGCTTCTGCTTTTGATTGTTTTTCAAGTGGGGATTTTGAGGAAAATAAGGTTGTTCTAGAGGAGATCTTGGGGGTACTCCCATGGATGATGAATCCAAGTCAAGAAGATGCAAGATTGAAATTGAGGTCTGAGGCATCTTTGAATTGCTTGGTTTGGTTTCTGAATGGGAATGACCTTTCAGCTAGGCAGAATGCAGCCATGGTGCTCAAGGAAATTCCTGTGAGAGCTCTGGCTAAAACTGAAGGGGTAATTGAAGCTTTGGTGAAGATGATTAGAGAGCCCATAGGACTGAATGCAACCAAAGCAAGCTTGACCAAGATTTTCCAGTTGGTTTCCTCATCAGATGACAAGGAGAGAATCTCACTGAGATTTGTGGAATTGGGTTTGGTTTCTTTGTTGCTGGAGGCCATTGTTGATGCAGACAAAAGCATATGTGAGAAGGCTTTGGGTGTGTTGGATTGCATCTGTGATTATAAAGAAGGGAAGGAAGTGGCCATGGCTAATGCTCTAACCCTGCCTCTTGCAACTAAGAAGATCCTAAGGGTATCAGCGTTGGCCACTGAGTTTTCAGTGTCCATTCTGTGGAAGCTCTGTGATAAGGAAGACGAAGAGGTTTTGGTTGAAGCAGTTCAACTTGGAGCTTTTCAGAAACTCCTGGTTTTGTTGCAGGTGGGTTGTGAAGAAAGCATGAAGGAGAAGGTCACAGAATTGTTGAAAGTGTTGAATGCTTATAGGAGCAGAGCGGAATGTGTTGATTCATCCTTGGATTTCAAGTACCTTAAGAAGCCCTTCTAG 1605 0.4424 MTLPRHTLLLLTHSQLIKQSHLTSAPTFEPTNPKSQSFFPFLNFFESFNGQRSTRPFLSRFKKLQIEYFTIHSTSTLTNVHQFSLRKVESFWFIEDCTSMVLSGTLRKVFRRAHKEKSLPGCGELDLEPVIPTHFRCPVSLELMKDPVTLSTGITYDRDSIERWIESGNNTCPVTKQVLLTTNMIPNHTIRRMIQDWCVENQSYGIERIPTPRIPIAPYEVSDTCSRIVAATRNGDVRKCQDLVGKIKNWGKESERNKRCVVENGACVVLASAFDCFSSGDFEENKVVLEEILGVLPWMMNPSQEDARLKLRSEASLNCLVWFLNGNDLSARQNAAMVLKEIPVRALAKTEGVIEALVKMIREPIGLNATKASLTKIFQLVSSSDDKERISLRFVELGLVSLLLEAIVDADKSICEKALGVLDCICDYKEGKEVAMANALTLPLATKKILRVSALATEFSVSILWKLCDKEDEEVLVEAVQLGAFQKLLVLLQVGCEESMKEKVTELLKVLNAYRSRAECVDSSLDFKYLKKPF 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1126 534 SMART Ubox_2 134 197 IPR003613 GO:0004842|GO:0016567
Mibi08g1126 534 Gene3D - 222 370 IPR011989 -
Mibi08g1126 534 Gene3D - 371 513 IPR011989 -
Mibi08g1126 534 SUPERFAMILY ARM repeat 227 511 IPR016024 -
Mibi08g1126 534 PANTHER WDSAM1 PROTEIN 128 521 IPR045185 GO:0061630
Mibi08g1126 534 SUPERFAMILY RING/U-box 130 207 - -
Mibi08g1126 534 ProSiteProfiles U-box domain profile. 130 204 IPR003613 GO:0004842|GO:0016567
Mibi08g1126 534 Pfam U-box domain 131 202 IPR003613 GO:0004842|GO:0016567
Mibi08g1126 534 CDD RING-Ubox_PUB 135 177 IPR045210 -
Mibi08g1126 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 208 IPR013083 -
Mibi08g1126 534 FunFam RING-type E3 ubiquitin transferase 125 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1126 Mibi-ChrMibi08 26189269 26191069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1126 112 534 U-box Gene Family AT5G37490 49.309 5.81e-125 371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1126 08 26189269 26191069 Mibi08g1126 08 26189269 26191069 CCT
Mibi08g1126 08 26189269 26191069 Mibi08g1126 08 26189269 26191069 ECH