Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1095 ATGGGAGAAGAGTCGTCTTTGACAATATCTACAACAGTTCCATCATTTGACAGAGCAGTTGATCAGGCAATTGTATCAATAAAGAAAGGTGCATACTTACTGAAGTGTGGATGCAGAGGGAAGCCAAAGCTCTGCCCATTCAGACTTTCTCAGGATGAGAAAAATTTGATTTGGTACTCCGGACAGCAGGAAAAACACTTGCGGTTGAGTTCGGTCACAAAAATTGTTCAAGGACAGGGAAATGTTAAGTCCCAAAAGCTATATCAGAATGGGAAGGAGTGCGATTCATTTTCTCTAATTTATGCTAATGGTGAACGCTCACTTGATCTGATATGCAAGGACAAAGCCCAGGCTACTTCTTGGTTTGTAGGCTTGAAAGCTATTATTTCTCAGTCCCAACACCAAAAACCTTATAGCAGTTTAAGAAGCTGCAAAGGTATACAGAGTTGTGTCAGCAGTCCAGCTGGAATCTTACGAAGAAAGAAAAACCTTGGCCTTCTGGAGGATACTGCTGAATTTACAAAGGTACACAGCGTATGTGCAAGTCCTACTTTGTCACTTTCAGAGAGGTGCTTTTCTGATGGCTTATCATATACTTGTGATAGCTTTTATTCATCAGAGTCTTTCCCGTCTGATGTTCAAAGGGCAATTGATAATTCAGTTCCAAGTTCTCCATTCATTGATCCAGACATTCTTAGCAAGAGTAGATCAACATATGTTAATACAAAATATCAGAAGGATTTGTCCTATAGGCATCTTGTGCCTGATACATCTCCACGTGTAGCAAATAGCAATATATTGAAAGATGTCATGATCTGGGGCGGGGGGATTGTTGGAATTGTAGGGAGTAGGGATGATCAGCTTGTTGACCAACAGGGAGCTCATGTGCTATTACCAAAGCTACTAGAATCCACCGTGATGTTAGATGTAGAACACATAGCATTAGGAGATAAACATGCTGCACTTGTTACAAAACAAGGTGAAGTGTTAAGCTGGGGTGAGGGGAAAGGAGGGAGGCTAGGGCTCAAAATTGATATGGATATAACCTCACCAAAAATTCTTGATTCTCTTGGTGGGGTCCATGTAAAGGATATTGCCTGTGGTGAGTATCATATGTGTGCTTTAACAAATTCTGGCGAAGTATATGCGTGGGGGAATGATGGCTGTGTTGCAGATCAGTTTGGTGAAGGGAGATTCAAAACTCAATGGATACCGCGCAAACTCTCTGGTCCTTTAGATGGTATTATTATATCACATGTCACTTGTGGGGAATGGCATACAGCAATTGTATCGTCTTGTGGACGGCTATTTACATATGGTGATGGTACTTTTGGAGCTCTTGGACATGGGAATTCTCTGAGCATTTCTCAACCAAAAGAAGTTGAATCTCTTAAGGGTCTATGGGTGAGGTCTGTTGCTTGTGGATCATGGCACACAGCAGCAATTGTTGAGGTCATGGTTGACCGGTTTAGGTATAATACTGGTAAGCTGTTCACTTGGGGTGATGGAGAGAAAGGGGTGCTTGGCCATGCCGATAACGGGAGGAAGCTCTTGCCAACTTGTGTTTCACAACTTCTGGATTGTGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCGCTCACTAATATGGGTAAAGTTTTCACAATGGGAAGTTCAGTGCATGGACAGCTAGGAAATCCGCATGCCAAGGATAAATCGGTGACAATTGTTGAAGGACTTCTTAAACAGGAGTTTGTGAAAGAGATATCATCAGGCTCATACCATGTTGCAGTCTTGACATCTTCCAGGAGTGTCTATACATGGGGAAAGGGTGCAAATGGACAGCTAGGGTTAGGTGACACTGAAGACCGATACTCACCGTCTTTTGTTGTTTCTCTAAGAGACTGGCAGGTAGAGAGAATTGCTTGTGGACCGAGCAATACGGCTGCTATCTGTTTACACAAACCAATTTCTATTAGTGACCAGTCAACTTGCAGTGGTTGTAAATTGCCTTTTGGGTTTACAAGGAAGAAGCATAATTGCTATAATTGTGGCCTCCTATTTTGTCATTCATGTAGTGGTAAGAAGGTCACTAATGCGGCTTTGGCTCCGAATAAGAACAAGGCTTTTCGGGTTTGTGATCAATGCTTCAATAAACAGCTTGGAAGTATGCCTTCGGTTGTGGCGTCAAGGTCCAGAAATGACAACTTTCAGAAGCTGCTGAAGAATCAGAACAAGTTTACTGATTTTACAGAAGATAGAGGAGAAACAACAGCATCACAGGGCCCTCTCTTGTTGTCTCTCGGTCAATCATGTTACAAAAGAAGCATGCAGGGTGGAAAAAGGGACTGGAAAAACCAACAGGAAAGCCAGCATAATTTAGAAAATATTTCTTCTGTATTTGGTGGAGTGCCAAAATGGGGGCAAGTTTCATGCCCTTCCCTGTTTGAAATTTCGTCGTTTAGAAATAAGTTAGGTTCTCTTACTTCAGTGAATTTAGAGTCCACCTTATCCAACAATTCATTTGGAGAGAAAGATGCTGCAAAGTCTGATAATACATTGATAGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTAGAATCCTTGAAGAGAAATGTGAGATAGGAAACCGTGAGTTACAAGAATGTCATAAAAAGATTGAGGAGACTTGGCGCTTGGCAAAGGAGGAGGCTGCAAAGAGCAAGGCAGCAAAAGAGGTCATAAAAGCATTGGTATTGAGGCTTTTTCAGCTACAAACGGTATCAGACAAAACCGTAGCTGCACAAGAAGGAAAGCTTGGGATACAGGAATGTCTGTCAAATTTAACGCCCATTTGTACAGATGTCATTTCTCTGAAGGATGGCAAAGTGGACAGTCTATCAAATTCCCCTATAGTGTTCTCTGACTCGTTAAAATCCAAACTTGCTAGAAGTTCAATCCTTAAATGTGATAGATCAAAGGAGGATTCTCAGTTAACTAAAGCAGAATCTCATGAGGATAGCTCTGAGGGCTTGAAGGTTGAACAGGTGGAACAGTTTGAGCCTGGTGTCTACATCACTTTGATTTCCTTGCCATGTGGGCAGAAGGGCCTTAAGAGAGTTAGATTCAGCCGGAAACAATTTTCGGAGAAGGAAGCCGAGCGATGGTGGGAGAAGAATCAAGCCTCAGTGTATCAGAAGTATAGGATTGAAGGACATATAAAGACAAGCCAAAATTGGGAGAAGGGCTAA 3216 0.4216 MGEESSLTISTTVPSFDRAVDQAIVSIKKGAYLLKCGCRGKPKLCPFRLSQDEKNLIWYSGQQEKHLRLSSVTKIVQGQGNVKSQKLYQNGKECDSFSLIYANGERSLDLICKDKAQATSWFVGLKAIISQSQHQKPYSSLRSCKGIQSCVSSPAGILRRKKNLGLLEDTAEFTKVHSVCASPTLSLSERCFSDGLSYTCDSFYSSESFPSDVQRAIDNSVPSSPFIDPDILSKSRSTYVNTKYQKDLSYRHLVPDTSPRVANSNILKDVMIWGGGIVGIVGSRDDQLVDQQGAHVLLPKLLESTVMLDVEHIALGDKHAALVTKQGEVLSWGEGKGGRLGLKIDMDITSPKILDSLGGVHVKDIACGEYHMCALTNSGEVYAWGNDGCVADQFGEGRFKTQWIPRKLSGPLDGIIISHVTCGEWHTAIVSSCGRLFTYGDGTFGALGHGNSLSISQPKEVESLKGLWVRSVACGSWHTAAIVEVMVDRFRYNTGKLFTWGDGEKGVLGHADNGRKLLPTCVSQLLDCDFVQVSCGRMLTVALTNMGKVFTMGSSVHGQLGNPHAKDKSVTIVEGLLKQEFVKEISSGSYHVAVLTSSRSVYTWGKGANGQLGLGDTEDRYSPSFVVSLRDWQVERIACGPSNTAAICLHKPISISDQSTCSGCKLPFGFTRKKHNCYNCGLLFCHSCSGKKVTNAALAPNKNKAFRVCDQCFNKQLGSMPSVVASRSRNDNFQKLLKNQNKFTDFTEDRGETTASQGPLLLSLGQSCYKRSMQGGKRDWKNQQESQHNLENISSVFGGVPKWGQVSCPSLFEISSFRNKLGSLTSVNLESTLSNNSFGEKDAAKSDNTLIEEVQRLRAEARILEEKCEIGNRELQECHKKIEETWRLAKEEAAKSKAAKEVIKALVLRLFQLQTVSDKTVAAQEGKLGIQECLSNLTPICTDVISLKDGKVDSLSNSPIVFSDSLKSKLARSSILKCDRSKEDSQLTKAESHEDSSEGLKVEQVEQFEPGVYITLISLPCGQKGLKRVRFSRKQFSEKEAERWWEKNQASVYQKYRIEGHIKTSQNWEKG 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1095 1071 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 912 - -
Mibi08g1095 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 362 389 - -
Mibi08g1095 1071 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 655 717 IPR017455 -
Mibi08g1095 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 547 598 IPR000408 -
Mibi08g1095 1071 SUPERFAMILY RCC1/BLIP-II 269 651 IPR009091 -
Mibi08g1095 1071 Gene3D - 392 657 IPR009091 -
Mibi08g1095 1071 PRINTS Chromosome condensation regulator RCC1 signature 379 395 IPR000408 -
Mibi08g1095 1071 PRINTS Chromosome condensation regulator RCC1 signature 420 436 IPR000408 -
Mibi08g1095 1071 PRINTS Chromosome condensation regulator RCC1 signature 536 554 IPR000408 -
Mibi08g1095 1071 PRINTS Chromosome condensation regulator RCC1 signature 594 615 IPR000408 -
Mibi08g1095 1071 PRINTS Chromosome condensation regulator RCC1 signature 436 450 IPR000408 -
Mibi08g1095 1071 PRINTS Chromosome condensation regulator RCC1 signature 269 285 IPR000408 -
Mibi08g1095 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 495 546 IPR000408 -
Mibi08g1095 1071 CDD FYVE_like_SF 660 713 - -
Mibi08g1095 1071 ProSiteProfiles BRX domain profile. 1002 1057 IPR013591 -
Mibi08g1095 1071 Gene3D - 19 137 IPR011993 -
Mibi08g1095 1071 SUPERFAMILY FYVE/PHD zinc finger 656 726 IPR011011 -
Mibi08g1095 1071 CDD PH_PLC_plant-like 18 130 - -
Mibi08g1095 1071 Pfam FYVE zinc finger 657 715 IPR000306 GO:0046872
Mibi08g1095 1071 Pfam Transcription factor regulating root and shoot growth via Pin3 1002 1056 IPR013591 -
Mibi08g1095 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 326 IPR000408 -
Mibi08g1095 1071 Gene3D - 244 391 IPR009091 -
Mibi08g1095 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 599 650 IPR000408 -
Mibi08g1095 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 658 722 IPR013083 -
Mibi08g1095 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 434 482 IPR000408 -
Mibi08g1095 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 547 595 IPR000408 -
Mibi08g1095 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 601 647 IPR000408 -
Mibi08g1095 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 495 543 IPR000408 -
Mibi08g1095 1071 SMART fyve_4 649 718 IPR000306 GO:0046872
Mibi08g1095 1071 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 472 482 IPR000408 -
Mibi08g1095 1071 Coils Coil 847 874 - -
Mibi08g1095 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 434 485 IPR000408 -
Mibi08g1095 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 379 433 IPR000408 -
Mibi08g1095 1071 SUPERFAMILY PH domain-like 19 129 - -
Mibi08g1095 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 327 378 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1095 Mibi-ChrMibi08 25654955 25662051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1095 1003 1059 Major Intrinsic Protein MIP AT1G31880 45.614 2.11e-10 62.0