Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1063 ATGCCCATGTTTCAATCTCTCACACTCCTTCTTCCCTTATTCACTGCCTTCATATCATTAAACGGCGTCGTTTCCGACCCACAGACCCATATACTCAACACTGGCTGCTTCCAATACAACAGATTAGACCCAGTTGACGCTAATTCCTTCAATCAAAGCTTAAACGCTGCGTTTAGAGATCTAGCTGCCGACCTGAACAACCACTCCGCCACGGCGGAGCAAGCCACCGGAACCATCCCGGTTTTCGCTCTTTTTCAGTGCAGAAGCTATCTCTCCGCCGCCGACTGCGCCGCCTGCTTCTCCGTCGCCGCCGCTCAAATCCGCAGCTGCTCTGCCGGCACCAACGCCGCACGTGTCATCTATGACGGCTGCTTCATCAGATATGAGAGCAGCAATTTCTTTGACCAAGCAACAGGGTCTTTCAATTCTGCATCATGTGGAAATCAGAAAGCAGAAGGAACCACTACAACATTATTCAACTCAGTTATTCAACAAGTGCTCATGAATCTTCAAACAGAAACACCCAGAATCACTGGTTTCTCTGCAGCCACAAAGACGCAAGTGCCTAACAACAACAACGACACAACCATTTATGCCTATGCACAATGTACCCAAACTATCTCACAAAGTGGATGCGAGGATTGCTTGAAGCAAAGCTACAACACTATGCAGACTTGTCTTCCTAATTCGGAAGGTAGGGCTTTTGATGCTGGCTGTTTCATGAGATACTCAACCACTTCCTTCTTTCCTGATAACCAGACCATTAATATCACACCCTCCTCCAAACAAGGTTCAAGTAACAAAAAGGGGGCCATTATTGGTGGAGTTGTTGGAGGTGTAGCTCTTGTTTTGGTTCTCCTTTCACTTTTTGCCTGGATGCATGTTAGACGGTCAAAAAGGTCTAGAAGGGTTCCTAGAGGTGAGATTATGGGAGAATCCAAATTGAGAGGCCCACTTCATTACAATTATAAGGATTTGAAGTCTGCCACCAAGAATTTCAGTGAAAAGAATAAGTTAGGAGAAGGAGGATTTGGCACTGTATACAAGGGCACATTGAAAAATGGACAAATAGTTGCAGTCAAGAAACTTGTTATGCGGCAATCCAATAGGATGGATGAAGAATTTGAAAGTGAAGTGAGACTAATAAATAATGTTCATCATCGAAATCTTGTTCGGCTTCTAGGATGGTGCAGCAAAGGGAATGAGAGAATTCTCGTTTATGAATACATGAAAAACAACAGTCTCGATAGATTTTTATTTGGTAGAAACAAAGGTTCTCTCAGTTGGAAGCAACGATATGATATAACCTTAGGCATAGCAAGGGGTTTGACCTATCTACATGAGGAATTCCACATTTGTATTATACACAGAGATATAAAACCTAACAACATTCTCCTTGATGATGATTTCCACCCTAAAATTGCTGATTTCGGGTCAGCACGACTTTTACCTGGGGATCAAACTCATCTAAGCACAAGATTTGCAGGAACATTGGGTTACACAGCACCAGAATATGCAATTCATGGCCAATTATCAGAGAAGACTGATACTTATAGCTATGGTGTTGTAGTTCTAGAAATCGTTAGTGGCCAAAAGAACAGCAAACTAAAGGTCGATGCTCATGCTGATGGTGAATTCCTCCTTCAACAAGCATGGAAACTATATGAGAAAGGCATGCACTTAGAGTTAGTGGACAATGCCTTAGACCCTAATGAGTATGATGCAGAAGAAGTGAAGAAGGTCATAGAGATTGGTTTGCTTTGCACTCAAGCATCTCCTGCAATAAGGCCAACAATGTCCGAAGTTGTTGTTTTGCTTCAAAATAAAAATGAAGGCTTATCAAAGAATATGAGACCCACCATGCCTCTCTTTGTTGATACCGATTCATCTTCAGGGTTTAAGGCAGACACTTCTACCTATACTGCTTCAGCCCCAGCATCCAATGCTACTATCTCTACTTCCAATATATCAGCAAGATCATGA 1983 0.4281 MPMFQSLTLLLPLFTAFISLNGVVSDPQTHILNTGCFQYNRLDPVDANSFNQSLNAAFRDLAADLNNHSATAEQATGTIPVFALFQCRSYLSAADCAACFSVAAAQIRSCSAGTNAARVIYDGCFIRYESSNFFDQATGSFNSASCGNQKAEGTTTTLFNSVIQQVLMNLQTETPRITGFSAATKTQVPNNNNDTTIYAYAQCTQTISQSGCEDCLKQSYNTMQTCLPNSEGRAFDAGCFMRYSTTSFFPDNQTINITPSSKQGSSNKKGAIIGGVVGGVALVLVLLSLFAWMHVRRSKRSRRVPRGEIMGESKLRGPLHYNYKDLKSATKNFSEKNKLGEGGFGTVYKGTLKNGQIVAVKKLVMRQSNRMDEEFESEVRLINNVHHRNLVRLLGWCSKGNERILVYEYMKNNSLDRFLFGRNKGSLSWKQRYDITLGIARGLTYLHEEFHICIIHRDIKPNNILLDDDFHPKIADFGSARLLPGDQTHLSTRFAGTLGYTAPEYAIHGQLSEKTDTYSYGVVVLEIVSGQKNSKLKVDAHADGEFLLQQAWKLYEKGMHLELVDNALDPNEYDAEEVKKVIEIGLLCTQASPAIRPTMSEVVVLLQNKNEGLSKNMRPTMPLFVDTDSSSGFKADTSTYTASAPASNATISTSNISARS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1063 660 SMART serkin_6 333 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g1063 660 Gene3D Transferase(Phosphotransferase) domain 1 410 622 - -
Mibi08g1063 660 ProSiteProfiles Gnk2-homologous domain profile. 32 133 IPR002902 -
Mibi08g1063 660 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 83 641 - -
Mibi08g1063 660 Pfam Salt stress response/antifungal 47 130 IPR002902 -
Mibi08g1063 660 Pfam Salt stress response/antifungal 146 245 IPR002902 -
Mibi08g1063 660 Gene3D Phosphorylase Kinase; domain 1 297 409 - -
Mibi08g1063 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Mibi08g1063 660 CDD STKc_IRAK 339 608 - -
Mibi08g1063 660 Pfam Protein kinase domain 333 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g1063 660 Gene3D - 31 133 IPR038408 -
Mibi08g1063 660 Gene3D - 139 248 IPR038408 -
Mibi08g1063 660 ProSitePatterns Protein kinases ATP-binding region signature. 339 362 IPR017441 GO:0005524
Mibi08g1063 660 Gene3D Single helix bin 257 296 - -
Mibi08g1063 660 ProSiteProfiles Protein kinase domain profile. 333 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g1063 660 SUPERFAMILY Protein kinase-like (PK-like) 317 624 IPR011009 -
Mibi08g1063 660 FunFam Cysteine-rich receptor-like protein kinase 2 410 614 - -
Mibi08g1063 660 FunFam Cysteine-rich receptor-like protein kinase 2 297 409 - -
Mibi08g1063 660 ProSiteProfiles Gnk2-homologous domain profile. 140 248 IPR002902 -
Mibi08g1063 660 FunFam Cysteine-rich receptor-like protein kinase 2 141 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1063 Mibi-ChrMibi08 25171998 25176777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1063 7 659 Receptor kinase-like Gene Family AT1G70520 36.295 9.08e-128 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mibi08g1063 Pkinase 2.4e-51 CL0016