LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi08g1050	ATGCTACAACCTAATCAAAATCTCTGCTCTTTGATCATCATCACTTTCATGTTCTGGTCATGGTGGACGATCAACGTCGTCGTTTCAGACCCACAGACCAATCTTTTAAGCCATGGGTGCACACCATCTAACGCTTTCGTCTTGTCCAACTTCACCATCTTCAGTAACAACGTTAACCAAACGTTTGCATACATCAGAGAAGAGCTTCTCAAAAATAGCAAGCTCTTTGTGACGAAACAGAAACCCAACGCAGAAAATCCAGTTTCCACACTTTTTCAATGCAGAAATTACCTCTCCGTTCATGACTGTGTTTCGTGCTTCGATGTTGCGGTCGGAGAAGTCCGTCGCTGCCCCGCCGGAGCAACGGGTGGCCGTGTCATCTATGACGGCTGCTTCCTCAGGTACGAGGCCACAGGTTTTTTTACTGAGACAACGGAGAATTTCAATACCGTATCGTGTGGTAATCAAAGTGTGAGAGAATCAACTACATTATTTACCTCACTTGTGCAACAAGTGCTAATGAATCTCCAAACAACAACACAGAAAAAGCAATGGTATTCCATGGCGGCAAAAGCACAATTGCCTAGTGAAAATAATAATGGTACAACTGTTTATGCCTTTGCTCAATGTATTCAAACAATCACACAGAGTGCTTGCGACGAATGCTTGAAGGCTTGTTATAGTAATATGCAGATTTGTCTTCCAAATTCGGATGGTAAGGCTTTAGCTGCTGGATGCTTCTTGAGATACTCCACCACTTCCTTCTTTCCAGATAATTACCGGACGATTGATCTCACTCCCTTGGGGAAACAAGGTTCAAGCAATAAGAGGGCCATTGTTGGTGGAGTTGTTGGAGGTGTAGTTATTGTTATGATCCTCCTTATATTATTAGCTTGTATTAGACGGCGAAAATGCACAAAGACGGTTCATAGAGGAGACATATTTAGAGCAACTATGTTGAAAGGTGTTGTTACATATAGTTTTAAGGATTTGAAGTTTGCAACCGAGAATTTTAGTGAAGAAAATAAACTAGGAGAAGGAGGATTTGGTGCAGTATATAAGGGCACTCTAAGAGATGGGAAAGAAATTGCAGTCAAGAAGTTAACTTTACAAAGCTCAAGGAGAATGGAGGACTATTTTGAAAGTGAGGTGAAGCTCATAAGTGATGTTCATCATCCAAATCTTGTTCAACTTTTGGGATGGTGTAGCAAAGGCCATGTTAGAATCCTTGTGTATGAGTACATGAAAAACAACAGTCTTGACAAATTCTTATTTGGTGGAAAGAAAGGTTATCTCCATTGGAAGCAGCGAATTGCTGATTTTGGATTGGCAAGGCTTTTACCTGATGATAGATCTCATCTTAGCACAAAATTTGCAGGAACATTAGGATACACAGCACCAGAGTATGCAATTCACGGTCAATTATCAGAAAAGGCAGACATCTATAGCTATGGTGTTGTAATCCTCGAAATCATTAGTGGCCAACAGAGCAAAGCCTTAAAGGATGACGGTGATACTGAAGATGAATTCCTACTTCCAAAAGCTTGGAAACTATATGAGAAAGGCATGCACTTAGAATTGGTGGACAATACCTTAGACCCTAATGAGTATGATGCAGAGGAAGTGAAGAAAATCATAGAGATTGGTTTGCTTTGCACCCAAGCGTTTGCTGACTTAAGGCCCACGATGTCTGAAGTAATTGGTTTTCTCCAAAGTAGTGACTTGTTAGAGAATATAAGACCCTCTATGCCTCTCTTTATTGTAACTAATTAG	1773	0.4078	MLQPNQNLCSLIIITFMFWSWWTINVVVSDPQTNLLSHGCTPSNAFVLSNFTIFSNNVNQTFAYIREELLKNSKLFVTKQKPNAENPVSTLFQCRNYLSVHDCVSCFDVAVGEVRRCPAGATGGRVIYDGCFLRYEATGFFTETTENFNTVSCGNQSVRESTTLFTSLVQQVLMNLQTTTQKKQWYSMAAKAQLPSENNNGTTVYAFAQCIQTITQSACDECLKACYSNMQICLPNSDGKALAAGCFLRYSTTSFFPDNYRTIDLTPLGKQGSSNKRAIVGGVVGGVVIVMILLILLACIRRRKCTKTVHRGDIFRATMLKGVVTYSFKDLKFATENFSEENKLGEGGFGAVYKGTLRDGKEIAVKKLTLQSSRRMEDYFESEVKLISDVHHPNLVQLLGWCSKGHVRILVYEYMKNNSLDKFLFGGKKGYLHWKQRIADFGLARLLPDDRSHLSTKFAGTLGYTAPEYAIHGQLSEKADIYSYGVVILEIISGQQSKALKDDGDTEDEFLLPKAWKLYEKGMHLELVDNTLDPNEYDAEEVKKIIEIGLLCTQAFADLRPTMSEVIGFLQSSDLLENIRPSMPLFIVTN	590

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi08g1050	590	Gene3D	Phosphorylase Kinase; domain 1	313	411	-	-
	Mibi08g1050	590	ProSitePatterns	Protein kinases ATP-binding region signature.	344	367	IPR017441	GO:0005524
	Mibi08g1050	590	ProSiteProfiles	Gnk2-homologous domain profile.	33	140	IPR002902	-
	Mibi08g1050	590	ProSiteProfiles	Protein kinase domain profile.	338	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi08g1050	590	FunFam	Cysteine-rich receptor-like protein kinase 2	302	414	-	-
	Mibi08g1050	590	ProSiteProfiles	Gnk2-homologous domain profile.	146	255	IPR002902	-
	Mibi08g1050	590	Pfam	Salt stress response/antifungal	153	252	IPR002902	-
	Mibi08g1050	590	Pfam	Salt stress response/antifungal	50	137	IPR002902	-
	Mibi08g1050	590	Gene3D	-	145	255	IPR038408	-
	Mibi08g1050	590	Gene3D	-	32	140	IPR038408	-
	Mibi08g1050	590	SUPERFAMILY	Protein kinase-like (PK-like)	322	584	IPR011009	-
	Mibi08g1050	590	Pfam	Protein tyrosine and serine/threonine kinase	437	568	IPR001245	GO:0004672\|GO:0006468
	Mibi08g1050	590	Pfam	Protein tyrosine and serine/threonine kinase	341	425	IPR001245	GO:0004672\|GO:0006468
	Mibi08g1050	590	Gene3D	Transferase(Phosphotransferase) domain 1	412	583	-	-
	Mibi08g1050	590	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	91	437	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi08g1050	Mibi-ChrMibi08	24574849	24579269	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi08g1050	7	587	Receptor kinase-like Gene Family	AT1G70520	32.182	2.45e-92	295

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Mibi08g1050		PK_Tyr_Ser-Thr	1.4e-11	CL0016