Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1009 ATGTCGCGGACGCTGGTACAGCCGATAGGGCAGAAAAGGTTGACCAATGTGGCTGTGGTGCGTCTGAAGAAGCATGGAAATCGCTTCGAGATCGCCTGCTATCCAAACACAGTCCTTTCTTGGCGTTCTGGCGTAGAGAAAGATATTGATGAAGTATTGCAGTCACATACTGTTTATTCAAATGTTTCAAAAGGAGTTCTAGCAAAGTCAAAGGATTTGGTCGCTGCTTTTGGGACTGATGATCAGTCAAAGATATGTCTGGAGATATTACAGAAAGGAGAGCTTCAGGTTGCTGGGAAAGAGAGGGAATCTATTCTTTCAAATCAGTTCAGGGATATTGCAACCATTGTTATGCAAAAGACATACAATCCTGAAACCCAACGTCCTTACACAATTAATATGATCGAAAGACTGATGCACGAAATACATTTTGCTGTTGACCCAAACAGCAGTTCAAAGAAGCAGGCACTGGAAGTTATTCAAGAGCTTCAAAAGCATTTTCCAATTAAACGGTGTCCACTAAAAGTACGAGTTGCTGCTCCAGAGGAGGAAGTGAATTCACTGCTAGATAAGCTGAATGTTTGGAAGGCCAGCCACATTTCAAAAGAAACATCTGCTAGTCAGTTGTCTGTTGTATTTGAATTGGAACCTAGTCTATATAAGGAGTGTCATGACTTTGTTATGAACAACATGCACGGAAGATTTGAAGTTCTTGGGCACTCTCTTTATGTAGATGGTGATACCCATGTGGAACAATACAATGATAATGAGGATCTGCGTGCTCCGATGCCCAAAGACTCTCATGAGTCTGTGCTTGAATTGAATGAAAAACTTCAGAAGCATACAATTTCTGCCAAGAGCGGACCGAGTGAGGGACAGCAAAAGCAAAACAAGTGCAACACATGCAATGCTTATTTTGAAAATCCTATGCTGTATAGGGAACACCACAAGAGCGAGTGGCACAAACACAATATGAAGCGCAAGACCAGGCAACTCCCTCCCCTTAGTGAGGAAGACTGCATGGCAGATATGGATCTGGATGACTCTAAATCTGATTTGAAGGATTATTCTTTTTGA 1077 0.4215 MSRTLVQPIGQKRLTNVAVVRLKKHGNRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKSKDLVAAFGTDDQSKICLEILQKGELQVAGKERESILSNQFRDIATIVMQKTYNPETQRPYTINMIERLMHEIHFAVDPNSSSKKQALEVIQELQKHFPIKRCPLKVRVAAPEEEVNSLLDKLNVWKASHISKETSASQLSVVFELEPSLYKECHDFVMNNMHGRFEVLGHSLYVDGDTHVEQYNDNEDLRAPMPKDSHESVLELNEKLQKHTISAKSGPSEGQQKQNKCNTCNAYFENPMLYREHHKSEWHKHNMKRKTRQLPPLSEEDCMADMDLDDSKSDLKDYSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1009 358 Gene3D - 174 251 - -
Mibi08g1009 358 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Mibi08g1009 358 Gene3D Classic Zinc Finger 289 344 - -
Mibi08g1009 358 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Mibi08g1009 358 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Mibi08g1009 358 SUPERFAMILY beta-beta-alpha zinc fingers 286 345 IPR036236 -
Mibi08g1009 358 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Mibi08g1009 358 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Mibi08g1009 358 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Mibi08g1009 358 MobiDBLite consensus disorder prediction 320 358 - -
Mibi08g1009 358 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Mibi08g1009 358 Gene3D - 100 172 IPR037188 -
Mibi08g1009 358 FunFam SBDS, ribosome maturation factor 3 96 - -
Mibi08g1009 358 FunFam SBDS, ribosome maturation factor 100 172 - -
Mibi08g1009 358 Gene3D - 1 96 IPR036786 -
Mibi08g1009 358 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 227 IPR002140 GO:0042256
Mibi08g1009 358 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 240 IPR039100 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1009 28 358 C2H2 Transcription Factor Family AT1G43860 57.267 2.94e-138 394