Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0963 ATGGATCCTGCTCGCTATGGGCTACGTCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGCCCACGAGTCAAATTATCGGGTTGGTGGTTCATATGACGAAAGGAGATTCGTAGATGAAAGGTACTCTAGGGATAATATATACCAGAGAGGTGCCTTTCACCGTGATGCGTTAGATAGGGAGGCATACCCTCCATCAGGACATGCTGTTGGCCATTGGAGTGAATCCAAACGGAGAGGTTATGATGAAGATTATTTGCTGGACAAGGAATCTAGACGTCTCCAGAGGCCTTATTATGATTCATATCAGCAAATTGATGCTTTCAGAGATAGGGATGTTGACATGTATCCAGAATTTGATAAGTTTCAAGATGGTTACGCCAGCATTGAAAACTATGATGATCGAGAATATGACAAGCCTGGTAGGTTTGTGGGACATGATCGGGATGACTATGCATATGATGATTATGGCTATAGGTCTCGTGTATCCCATCATTATAGGGAGGATAGCCATGAGAGGGATATTGATCATGGTCGTCATAGTCATGATTCTGATTATGGGAGAGGTAAAAGAGATAGCAATTGGAGGCGACGTGGATCTCGTGACCGAGAATATGATAGAAGACATTTGAGCAGGGAAAGAGATTTGAGTCCGCGTAAGAGGCATGAGCGGTCCCGGTCCCGGTCCCGGTCCGGTTCTCCATCTCGATCTCGATCCCGATCCCACTCTCATTCTCATTCACGCTCTCGTTCCCAATCTCATGGATATGATGATCGTCCAAGGTCAAGGTCCCCACGAGGTCGAAGTCATGGTCGGAGTTATCGAGAAGACAGCTATGCTGATAGTCGATATGAGAGAAGTGAAAAGCGAAGAGATCGTGAAGAGAAAAGGCGTGATCACTATTCAGTGGCTCCATCTGCTACTGTTGTTGTAAAAGGTCTTTCACAAAATGCCAACGAAGAAGATCTATACCAGATTCTTGCGGAATGGGGGCCACTTCGGCATGTTCGTGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACGGGCAATGATGGACAAACTTGGAGATGATGGTCTTGTCGTGGATGGTAGAAGGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATATATGAAATCAGGTCATAATCATAAAAGCATTACAGTACCATCTGATTGGATGTGCACCATATGTGGTTACATCAATTTTGCCCGACGAACATCCTGTTATCAGTGTAATGAACCACGAAGTGAGGATGCTCCTGCGGCAGATATTACTTTGTCAAATCCAGCAGCCTCAGGAAAGAAAGGATTAGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAGTTCTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTGTCCAGGGGATTTGCTTTTGTACATTTTTATTCGGTGGAGGATGCCTCTAAGGCTCTTGAAGCAACGAATGGAACAACCCTGGAAAAGAATGGACAGATTCTAAGAGTAGCATATGCAAAAAGTATCCTGGGTCCTGGATCAGGAACATCAGGTCCTTCCCAGTCAAGTAGTTTAGCAGCTGCTGCTATTGAGGCTGCGACATTTGCTCAACAGTATGATTCTGTTGGATGGGCTCCTAAAGAATACAATCCAGATGACAAACAATCTACTGGTCAAGAGCAAACTGGTGCAGCTCAGACAAATGCATTGGCTCCAGAATCAGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCAGGGTTTTACTATGATGGCAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCTTATGATCACAATACTCAGCAATATATCCCTTGCACTGATCAAACGGAGAATAAAGCTCCTAGTAATCAGTCTGAACCTTCCAAGGTGTCTGGCAGTTCCAGCAGTAAAAAAGTGATTATTTCTGCACCTGCTACTACTGTTTCATCGGCTGAGAAGCCAGCTTCTCTGGCAGATGCAGTTCAAGCTGCTGCAACTGCTGCCATAGCTGCCGAGAAGAAAGAAAAAGAAAAATTGAAGGAGATAAAGCTTGCTTCCAAAAGCAGTATTCTGGCTAACAAAAAGAAAATGAATAACGTGTTAACAATGTGGAAGCAGAGGAGCCATGAGGGTCAAGCTACTCGTGTAGCTCTGGAAGACAATCACCAATTCACATCCGTTGATGATAGGCCTTCTGGATATCCCACAAAGAGCAAGTTCAAGAATGAGTTTGCAGATACAAGGGAGAATAGTATGTCCACTTCAGGGATGCCCACTGCCCCTGCTTCTCAGGCAGTTGCTTCAGATTCTCAGGTTCAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTCTGATGGGAGTTATAAGAGGATCTGGAAGAGGGATCGTTAAATCTGATAGTTCTTACTCAGGGCCTACAGCTTCAGCGGCTTCATGTACATCAGTTGCGTCTTCATCAAGTGTAGATGCTTCTACTGTTGCGACTCCCTTTAGAACAGATGTCTCTGCACTGGGGTCATATGCTTCACCTGCCTCTACTGGAAGTGGCCGAAGAAGATTTTCAGAAATGCCTCATTCTGCTTCAGCCCTCAAGGAACAACCTCAAACTACCTACAGGGATCGTGCAGCTGAGAGAAGAAGTTTGTATGGTTCATCATTGGGAGTTGGGGAGGATTTGGCTGATCTGGAATCTGGGAATCCAAATCGAGATTTTGCATCGAGGAAGGGTGATCCAATGCCTTTCCCTCCTGGGGTTGGTGGAGGACGTATGGTTGGAGATGCCAACCTTGATACGTACGAGGTGATTACAGCTGAGAAAGCAATTGATGAGAACAATGTTGGCAATCGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGTCTAGGTAAGGATGGAAGTGGAATGATAGAGCCTGTCCAGGCACAATCGACAGATAGTAGAGCAGGACTTGGAAGTCAGCAGAAAAAGTTGGATCCTAGCCTTGAGGCTCAGGCAGGAGATAGTTACAAGACGCTTATTCACAAGAAAGCACTTGCCAGATTTTGGGAAATGTCATAA 3222 0.4519 MDPARYGLRQGWDNNSALEGYGAAHESNYRVGGSYDERRFVDERYSRDNIYQRGAFHRDALDREAYPPSGHAVGHWSESKRRGYDEDYLLDKESRRLQRPYYDSYQQIDAFRDRDVDMYPEFDKFQDGYASIENYDDREYDKPGRFVGHDRDDYAYDDYGYRSRVSHHYREDSHERDIDHGRHSHDSDYGRGKRDSNWRRRGSRDREYDRRHLSRERDLSPRKRHERSRSRSRSGSPSRSRSRSHSHSHSRSRSQSHGYDDRPRSRSPRGRSHGRSYREDSYADSRYERSEKRRDREEKRRDHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRRLFFEYSSKPTGGPGGPFGQEGYMKSGHNHKSITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPAASGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGPSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGQEQTGAAQTNALAPESGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHNTQQYIPCTDQTENKAPSNQSEPSKVSGSSSSKKVIISAPATTVSSAEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNHQFTSVDDRPSGYPTKSKFKNEFADTRENSMSTSGMPTAPASQAVASDSQVQPRPVSNSLGGTLMGVIRGSGRGIVKSDSSYSGPTASAASCTSVASSSSVDASTVATPFRTDVSALGSYASPASTGSGRRRFSEMPHSASALKEQPQTTYRDRAAERRSLYGSSLGVGEDLADLESGNPNRDFASRKGDPMPFPPGVGGGRMVGDANLDTYEVITAEKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQAQSTDSRAGLGSQQKKLDPSLEAQAGDSYKTLIHKKALARFWEMS 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0963 1073 SMART zf_4 418 442 IPR001876 -
Mibi08g0963 1073 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 390 IPR000504 GO:0003723
Mibi08g0963 1073 ProSiteProfiles Zinc finger RanBP2 type profile. 416 445 IPR001876 -
Mibi08g0963 1073 MobiDBLite consensus disorder prediction 253 304 - -
Mibi08g0963 1073 SUPERFAMILY RNA-binding domain, RBD 469 559 IPR035979 GO:0003676
Mibi08g0963 1073 MobiDBLite consensus disorder prediction 800 833 - -
Mibi08g0963 1073 SMART rrm1_1 472 547 IPR000504 GO:0003723
Mibi08g0963 1073 SMART rrm1_1 311 386 IPR000504 GO:0003723
Mibi08g0963 1073 CDD RRM1_RRM2_RBM5_like 469 549 - -
Mibi08g0963 1073 MobiDBLite consensus disorder prediction 667 689 - -
Mibi08g0963 1073 MobiDBLite consensus disorder prediction 891 927 - -
Mibi08g0963 1073 SUPERFAMILY Ran binding protein zinc finger-like 410 446 IPR036443 -
Mibi08g0963 1073 SUPERFAMILY RNA-binding domain, RBD 305 407 IPR035979 GO:0003676
Mibi08g0963 1073 MobiDBLite consensus disorder prediction 226 252 - -
Mibi08g0963 1073 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 372 IPR000504 GO:0003723
Mibi08g0963 1073 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 539 IPR000504 GO:0003723
Mibi08g0963 1073 SMART G-patch_5 995 1041 IPR000467 GO:0003676
Mibi08g0963 1073 MobiDBLite consensus disorder prediction 589 611 - -
Mibi08g0963 1073 Pfam G-patch domain 998 1039 IPR000467 GO:0003676
Mibi08g0963 1073 MobiDBLite consensus disorder prediction 169 225 - -
Mibi08g0963 1073 ProSitePatterns Zinc finger RanBP2-type signature. 420 439 IPR001876 -
Mibi08g0963 1073 MobiDBLite consensus disorder prediction 778 839 - -
Mibi08g0963 1073 Pfam OCRE domain 616 664 IPR041591 -
Mibi08g0963 1073 ProSiteProfiles G-patch domain profile. 997 1043 IPR000467 GO:0003676
Mibi08g0963 1073 MobiDBLite consensus disorder prediction 169 304 - -
Mibi08g0963 1073 Gene3D - 413 446 - -
Mibi08g0963 1073 Gene3D - 456 608 IPR012677 -
Mibi08g0963 1073 Gene3D - 275 412 IPR012677 -
Mibi08g0963 1073 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 471 551 IPR000504 GO:0003723
Mibi08g0963 1073 PANTHER RNA-BINDING PROTEIN 203 1069 - -
Mibi08g0963 1073 CDD OCRE_SUA_like 614 665 IPR035623 -
Mibi08g0963 1073 CDD RRM1_RRM2_RBM5_like 308 388 - -
Mibi08g0963 1073 MobiDBLite consensus disorder prediction 943 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0963 Mibi-ChrMibi08 22915555 22923280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0963 309 535 Eukaryotic Initiation Factors Gene Family AT2G36660 24.609 3.46e-08 55.8