LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi08g0887	ATGCCTAGAGAGGTAGTTCAAGATAAGTACATTATAGATGATTCCAACAGAGATGTTTCATTCAACAAAAGAAAAGCAACTATCAAGAAAAAAGCACGTGAACTCAGCATCCTTTGTGGTGTTGAGGCCGGTGCAATCATCTATAGTGGTGAGCCCTCTAATCCTGAACCTGAGGTTTGGCCGGATGATAAAGGTGTCCATCAACTAATTGAGAGATTTCAAGCCAATCCTATAGGGCATAGGAATTTGATAATAGAGGAATCTTTAGAAGCAAGGATCAACAGAGGGAAAGAACTTCTAAGGATACGACGACAAGAGAACCATATGGAAGAGATTTCCCAACAAATGATCCAATGTCTGGTAGGGAAAGCAAAGCCTAATCTTACAAATTGGAATGATATGAAGATATTAGTTGAACAAAATTTGAAGAACATGAGGAGGATAGAGCTAGAATCTAGACAACGATTGAAATTCCCTGTTCCGCCACCGATAATGTCAGAGGATTTGCGAGTTTGCAAGGAAAATGAAATGTTGTTGCCATCTAGCAGTGTCAATCCATATATTCCAAATCAACCAAAAAATGAAGTATTGACATTTAATGTACAGAATGATAATATGGTAGACCAAAATCTGCTGAATGGCATGGACATAGGAAATAGGGAAGAATATATTGGAATTGGAGGATATGAGAATCAACAACTTTCCAACAATTCCAATCACCAATATGGTCCTCTATTTTACAATCCATCTTCTCGCTGA	759	0.3794	MPREVVQDKYIIDDSNRDVSFNKRKATIKKKARELSILCGVEAGAIIYSGEPSNPEPEVWPDDKGVHQLIERFQANPIGHRNLIIEESLEARINRGKELLRIRRQENHMEEISQQMIQCLVGKAKPNLTNWNDMKILVEQNLKNMRRIELESRQRLKFPVPPPIMSEDLRVCKENEMLLPSSSVNPYIPNQPKNEVLTFNVQNDNMVDQNLLNGMDIGNREEYIGIGGYENQQLSNNSNHQYGPLFYNPSSR	252

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi08g0887	252	ProSiteProfiles	MADS-box domain profile.	1	49	IPR002100	GO:0003677\|GO:0046983
	Mibi08g0887	252	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Mibi08g0887	252	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mibi08g0887	252	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Mibi08g0887	252	SMART	madsneu2	1	62	IPR002100	GO:0003677\|GO:0046983
	Mibi08g0887	252	PANTHER	MADS BOX PROTEIN	9	148	-	-
	Mibi08g0887	252	MobiDBLite	consensus disorder prediction	233	252	-	-
	Mibi08g0887	252	Gene3D	-	13	95	IPR036879	GO:0003677\|GO:0046983
	Mibi08g0887	252	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	49	IPR002100	GO:0003677\|GO:0046983
	Mibi08g0887	252	SUPERFAMILY	SRF-like	3	94	IPR036879	GO:0003677\|GO:0046983
	Mibi08g0887	252	CDD	MADS	3	61	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi08g0887	Mibi-ChrMibi08	20619735	20620493	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi08g0887	1	150	Type I MADS-box Gene Family	AT5G48670	39.490	3.29e-25	99.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Mibi08g0887		SRF-TF	1.5e-15	No_clan