Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0886 ATGCCAACTCCACTTATCGATAAACAACGGTCCCTAAATCTCCACGTTCCAATTTCCCGGATTACAATTGATTTTAAGAGCTCGAGGTTCTGGAATCTTCTTTTCCGATTCCGAGAATCATCACGCTCTTCTGTATTGCTTAAACCTCACGCTGAGTCGATCGATTCGAGTTTGGCTGAGTCATCAATGGCGGATTCGGATAACGATTCAGGCGGCGCACAAAACGCGGGAAACGCAAACAGCATCGAACAATCTCTGAGAGAGCAAGACCGATTCCTACCGATAGCGAATGTGAGCAGGATAATGAAGAAGGCACTTCCAGCGAATGCGAAGATATCGAAGGATGCGAAGGAGACCGTACAAGAGTGCGTATCGGAGTTCATAAGTTTCATCACAGGCGAAGCTTCTGACAAGTGTCAGAGAGAGAAACGGAAGACAGTCAACGGTGACGATTTGCTTTGGGCGATGACGACGTTAGGATTTGAGGATTACGTGGAGCCTCTCAAGATATACCTTCAGAGATTCAGGGAAATGGAAGGTGAGAAGAGCGTGGCCGCGCGTGACAAGGACGGCGGTGTTGGGAGCGTGAACGTTGGCTACGATGGTGGTGGTGGTGGTGGAGTGTATGGTGGGATGGGGATGATGATGCATCAGGGACACGTGTACGGTTCTGGTGGGTTTCATCCGATGGCTGTGAGTGGAGGGAGTGGTGGTCCTGTGATGGGGAAGAGTGGGCCCGGTTATCCTAGTGCTGGAACTAATGCAGGTAGGCCCAGATAG 780 0.5051 MPTPLIDKQRSLNLHVPISRITIDFKSSRFWNLLFRFRESSRSSVLLKPHAESIDSSLAESSMADSDNDSGGAQNAGNANSIEQSLREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTVNGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKSVAARDKDGGVGSVNVGYDGGGGGGVYGGMGMMMHQGHVYGSGGFHPMAVSGGSGGPVMGKSGPGYPSAGTNAGRPR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0886 259 PRINTS CCAAT-binding transcription factor subunit A signature 139 157 - -
Mibi08g0886 259 PRINTS CCAAT-binding transcription factor subunit A signature 158 176 - -
Mibi08g0886 259 PRINTS CCAAT-binding transcription factor subunit A signature 120 138 - -
Mibi08g0886 259 MobiDBLite consensus disorder prediction 58 78 - -
Mibi08g0886 259 SUPERFAMILY Histone-fold 89 189 IPR009072 GO:0046982
Mibi08g0886 259 FunFam Nuclear transcription factor Y subunit B-3 81 198 - -
Mibi08g0886 259 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 92 156 IPR003958 -
Mibi08g0886 259 MobiDBLite consensus disorder prediction 237 259 - -
Mibi08g0886 259 ProSitePatterns NF-YB/HAP3 subunit signature. 123 139 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mibi08g0886 259 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 66 186 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mibi08g0886 259 Gene3D Histone, subunit A 79 195 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0886 Mibi-ChrMibi08 20599514 20600765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0886 63 186 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.484 1.81e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mibi08g0886 CBFD_NFYB_HMF 3.9e-27 CL0012