LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi08g0804	ATGAGGAAAGCCGGCAGATCGGCCGTACCGGCTGCTGACGTGGCAGCAGCAGCAGTGGCAGCGGCTGACGGAGGATCCGGATCGAGGACGGCCTTAAAAGAGCCGAGATTCCGTGGCGTAAGGAAGAGACCATGGGGAAGATTCGCAGCAGAAATCAGAGACCCCGTGAAGAAAGCTCGTGTTTGGCTTGGTACCTTTGATTCCGCCGAAGAAGCCGCTCGAGCTTACGACGCAGCCGCCCTCAGCCTACGTGGACCAAAGGCTAAGACCAATTTCCCAATCAACCCTTCCTCTCTCTCACCTTTCTGTTACCACCACAACAATAATAACCACCACAACAACAACAACAACAACAACCCTAACAACCCTACGGATCCGTTTTTAGATCACAGGTTGTATGCAGCTTCTGGTGGATTTCAGGATCATCAGATCAATCCTCAGAGGCCTACTTGTAGTGGTATGAGCAGCACCGTTGAATCTTTCAGCGGTCCGCGGCCGAGGTCGATTGCGCCGATTGCGGCGCCGTTGACCGGCTCGGCTTCGAGGCGATACCCGCGGACGCCGCCGGTGGTGCCGGAGGATTGTCGAAGCGACTGCGATTCGTCGTCGTCGGTGGTGGATAACGAGGGGGATGATATCGTGTCGTCGTCGTTCCGGCGGCCGCCTTTTCTGTTCGATCTTAATTTCCCGCCGCTTGATGATGATCTTCACTGCACCGATCTGCGTCTCTGA	732	0.5587	MRKAGRSAVPAADVAAAAVAAADGGSGSRTALKEPRFRGVRKRPWGRFAAEIRDPVKKARVWLGTFDSAEEAARAYDAAALSLRGPKAKTNFPINPSSLSPFCYHHNNNNHHNNNNNNNPNNPTDPFLDHRLYAASGGFQDHQINPQRPTCSGMSSTVESFSGPRPRSIAPIAAPLTGSASRRYPRTPPVVPEDCRSDCDSSSSVVDNEGDDIVSSSFRRPPFLFDLNFPPLDDDLHCTDLRL	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi08g0804	243	ProSiteProfiles	AP2/ERF domain profile.	36	93	IPR001471	GO:0003700\|GO:0006355
	Mibi08g0804	243	Gene3D	AP2/ERF domain	36	95	IPR036955	GO:0003700\|GO:0006355
	Mibi08g0804	243	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	28	210	-	-
	Mibi08g0804	243	CDD	AP2	35	95	IPR001471	GO:0003700\|GO:0006355
	Mibi08g0804	243	SUPERFAMILY	DNA-binding domain	36	94	IPR016177	GO:0003677
	Mibi08g0804	243	MobiDBLite	consensus disorder prediction	145	208	-	-
	Mibi08g0804	243	Pfam	AP2 domain	35	85	IPR001471	GO:0003700\|GO:0006355
	Mibi08g0804	243	SMART	rav1_2	36	99	IPR001471	GO:0003700\|GO:0006355
	Mibi08g0804	243	PRINTS	Ethylene responsive element binding protein signature	37	48	IPR001471	GO:0003700\|GO:0006355
	Mibi08g0804	243	PRINTS	Ethylene responsive element binding protein signature	59	75	IPR001471	GO:0003700\|GO:0006355
	Mibi08g0804	243	MobiDBLite	consensus disorder prediction	145	163	-	-
	Mibi08g0804	243	FunFam	Ethylene-responsive transcription factor 2	36	95	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi08g0804	Mibi-ChrMibi08	17984733	17985464	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi08g0804	14	243	AP2-EREBP Transcription Factor Family	AT1G50640	61.411	9.69e-65	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi08g0804		AP2	1.3e-15	CL0081