LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi08g0764	ATGGTGACCAATAATCCGGAGGAGGTAAAGCATGAAAGTGAGGAGGCATATGGGATGATCGGTGAGCCGGGTGGCGGCGGCGGACCGGTGGCGTCGGAGGAGGTGGTTCTGAAGAAAGGACCGTGGACGGCGGCGGAGGACTCCATTTTAATGGAGTATGTGACAAAGCATGGAGAAGGGAATTGGAATGCAGTGCAGAAAAATACAGGGCTAGCACGATGTGGGAAAAGTTGTAGGTTGAGATGGGCAAACCATTTGCGACCAAATTTGAAGAAGGGATCTTTTTCTCCAGAAGAAGAGAAACTCATCCTGGAACTTCATGCACAGTTTGGTAACAAATGGGCCCGCATGGCTGCTCTGTTACCTGGACGTACAGACAATGAAATCAAGAACTATTGGAACACAAGAGTGAAGCGCCGTCAAAGACAAGGCCTCCCTCTTTATTCCGACGAACCTGATCGAATAATCACCTCCTCTCCCAAAACCAACATCACCTCCCCTAATAATAATCATAATAATGTCTCACATTTTGAGTTCCTTCATCACCTTCCTCATTATCATCATACTTTCCCTTCTCCTACCCCACCTCCTCAATATTCCCCTCTTTCATCTCCACTTCCTCCTAAACCCACCATTTCTGACCCCATGATTCCTCTTTCCTCTCCTCCTTCTTCTTCCATTACCTCCCCTCATTCCTTCATCTTTAGCCGCCCTGCCCCACTTCTTTCTAGCCCTATTTCCTTCAAAAGATACCGTACTTCTTCAGGTTTTCCCCTCCATTTGGCCACAAATAATAACAACAACAATAATATTGTAACCTCTTCTTCCCTTCCGGATCGGTTTTCCGGGTTCGGATATTCGGGTCAGGTTGATAGCCCGGGTTTGTCTCATGTTTACCAAGCTCCATTGTTAGATCAGTATGATCATAATCGAGGTGGGGTTTTGAACCAATTTGCGAGTTCCCCTGCAAAATTTGAGCTCCCTTCAAACCAGTTTTCGCCCCACCATTCTAACAATAATAATATTATACAGCAGCAAGAGAGCAAGTTTAACATGCAAATTATGAACCATAATGGTGCTATGAAGAATAATGGTGGTTCTGGTGGTGCTAATAATAATGGGTTTCTGGGAGATTCTCTCTTTCAAGATCATCAGAGTTTGACACCAGGCCATCAGACGGCAATGACCAAAAGAAGTTATTTCTATACAGATGAAGGGAACGTTCTTGACGGTGGACAACGAGCCTTTGATGAATTGCCCCTTAACTCTTCTAACTGGCCTCCAAATGCAGAACTGAAACTGAAGGAAGAAGCACAAGACCTGTGTAAATCCATGAGCGACGACTTATCTTTGATGATCGACGTAATGCCATCATCGCTGTCTGTTTCAGATTGGCCTGCCAGCAACGCTGCAGAAGTTTCTAATAATAATGTTCAATCCTCTGGTGTCATTCCGGACGATAACTTTGGACTTGACACTAAACCCATTGCTTCTTTGTTTCCTATAACAACCACTTCAACAAATCATAATGACAATTCTGGATGCTACTCTTGGGATGACTTACCAGGATTTTGCTAA	1578	0.4461	MVTNNPEEVKHESEEAYGMIGEPGGGGGPVASEEVVLKKGPWTAAEDSILMEYVTKHGEGNWNAVQKNTGLARCGKSCRLRWANHLRPNLKKGSFSPEEEKLILELHAQFGNKWARMAALLPGRTDNEIKNYWNTRVKRRQRQGLPLYSDEPDRIITSSPKTNITSPNNNHNNVSHFEFLHHLPHYHHTFPSPTPPPQYSPLSSPLPPKPTISDPMIPLSSPPSSSITSPHSFIFSRPAPLLSSPISFKRYRTSSGFPLHLATNNNNNNNIVTSSSLPDRFSGFGYSGQVDSPGLSHVYQAPLLDQYDHNRGGVLNQFASSPAKFELPSNQFSPHHSNNNNIIQQQESKFNMQIMNHNGAMKNNGGSGGANNNGFLGDSLFQDHQSLTPGHQTAMTKRSYFYTDEGNVLDGGQRAFDELPLNSSNWPPNAELKLKEEAQDLCKSMSDDLSLMIDVMPSSLSVSDWPASNAAEVSNNNVQSSGVIPDDNFGLDTKPIASLFPITTTSTNHNDNSGCYSWDDLPGFC	525

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi08g0764	525	SUPERFAMILY	Homeodomain-like	38	133	IPR009057	-
	Mibi08g0764	525	Gene3D	-	38	91	-	-
	Mibi08g0764	525	MobiDBLite	consensus disorder prediction	1	32	-	-
	Mibi08g0764	525	FunFam	MYB-related transcription factor	38	91	-	-
	Mibi08g0764	525	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	87	141	IPR017930	-
	Mibi08g0764	525	SMART	sant	38	88	IPR001005	-
	Mibi08g0764	525	SMART	sant	91	139	IPR001005	-
	Mibi08g0764	525	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	37	86	IPR017930	-
	Mibi08g0764	525	ProSiteProfiles	Myb-like domain profile.	87	137	IPR001005	-
	Mibi08g0764	525	MobiDBLite	consensus disorder prediction	155	169	-	-
	Mibi08g0764	525	FunFam	Transcription factor GAMYB	94	140	-	-
	Mibi08g0764	525	CDD	SANT	41	86	IPR001005	-
	Mibi08g0764	525	Pfam	Myb-like DNA-binding domain	92	135	IPR001005	-
	Mibi08g0764	525	Pfam	Myb-like DNA-binding domain	39	86	IPR001005	-
	Mibi08g0764	525	Gene3D	-	94	140	-	-
	Mibi08g0764	525	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	20	477	-	-
	Mibi08g0764	525	CDD	SANT	94	135	IPR001005	-
	Mibi08g0764	525	MobiDBLite	consensus disorder prediction	150	169	-	-
	Mibi08g0764	525	ProSiteProfiles	Myb-like domain profile.	34	86	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi08g0764	Mibi-ChrMibi08	16670200	16674351	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi08g0764	18	248	MYB Transcription Factor Family	AT4G26930	52.814	3.48e-68	223

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mibi08g0764		Myb_DNA-binding	5.3e-13	CL0123