Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0728 ATGGAGTCCGACATTTGCGTGAATACTACGTGCGGTGCGGTCACTGCTCACCAATGGAAGAAGGGGTGGCTGCTGCGATCTGGAGGATTTGCTAAACTCTGTGATAATTGCGGATCTGCCTATGAAAATTTTGTTTTCTGTAAAAAGTTTCACCTCGAAGAATCTGGTTGGAAAGAGTGCAACTTCTGCAAAAAGCCTATTCACTGCGGATGCATCGTATCTAAATCTCTGTTCGAGTATCTTGATTTTGGCGGTATAGGCTGTATTAGCTGTGTAAAATCTCCCCAACTTCATTTGATGCAAAAAAATGAAATTTCTAGTGGGGCTATTGCACCATCCAAAAATGTTGCAAGTGAACCACATTCTATTCAAATTGATGGTAGAATTTCTGTGGATAGTGTTAATGAAGGAAAACTTATGCAACTATGCAAAATTGTTGAAGCTAGTGAATCTAGCCACTGGTCTCAAGTTCAAAGTGATGGGATATTTTTAACTAGTGGGCAGAACAGCCAGGAAGTTAAGTGTCGGGAAGTGGATGCAACATTTTCGAATGTGATGAATCCATCCATTCAGTCATTAACATTTGCCAAATTAGAAAATAATAGACCGGCATGGGAGGTAAAAAATATGCACGAATTACCTGTGCAGCCATCATTGTGTATGTCTCTGGGATCTCCATCAAGAAACTCTGTTCTGCCTTCTGCTGGAGAGATTGTAGAAGGAAGAGGTGAGGAAAAACCATCTCCTTTTCATCAAGGGCAAAGATCTCGGCCTATATTGCCCAAACCACCAAAGACTGGACTAACCCTACATCAAGAAACAAATAAAGCCATGCTTTCTCAGCCACGAATAGCCCGGCCACCTGCTGAGGCAAGGGGCAAGAATCAGTTGCTTCCTCGATACTGGCCCCGGATCACTGATAAAGAGCTGGAGCAATTGTCTGGAGATTTGAAGTCAACTGTAGTGCCACTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTTCCAAAAGCATGTGCTGAAGCTTATTTTCCTCCCATTTCTCAATCAGAAGGTCTTCCTTTGCGGATCCAAGATGTGAAGGGGAACGAGTGGACATTTCAGTTTCGATTTTGGCCCAATAACAACAGTAGGATGTATGTGTTGGAGGGTGTGACTCCTTGCATTCAGGCCATGCAATTACGTGCTGGTGATACTGTAATATTTAGTCGGATAGATCCTGGGGGCAAACTTGTTATCGGTTTCAGGAAGGCATCTAATTCTGTAGATGCACAGGATGCCTCTACATCTGCACCTTCTAGTGGCATTTCAATGAAGGATAATTCTTGTTCTGGGGTCACTGATAATCTTCACTCAGGAAACAGTTATCCTGTTCCTCTCCAGTCTATGAAGGTGAAGAAGGAACCTTACTCAAATGGACTTTCAGAACATCTGCATTTGAATAATATGGATGATGGTTTGCCTAAGTCTGAAAATTGTGAAAGCATCACAAACAATGATTCTCTGCAGCAGCCAATACCAATCTCAGAGAAGAAGAGGACTCGAAATATTGGGTCTAAAAGTAAGAGGTTGCTCATTCATAGTGAAGATGCCATGGAGTTGAGGCTTACTTGGGAAGAAGCTCAGGACTTACTTCGTCCACCACCTAATGTCAAGCCAAGCATTGTAACTATAGAGGACCATGTGTTTGAAGAGTATGATGAACCTCCTGTTTTTGGAAAGAGGACTTTTTTCACTACACATTCATCTGGGAGACAAGATCAATGGGCTCAATGTGATGATTGCTGCAAATGGCGAAGGCTCCCAGTAGATGTTCTACTTCCTCCTAAGTGGTCATGCTCAGAAAATGAGTGGGATGATATCAGGTCTCTCTGTTCTGCACCAGAGGAGCTCACTCGGAAGGAGTTGGAAAATCTTCTGAGAATTAGCAAAGGTTTTAAGAAGAAAAGAACTGCAGAAGATAGGAAGTCACCTCAAGAGCATGAAACTTCTGGCTTAGATGCTCTTGCCAGTTTGGCAGTTTTAGGAGATAATTTTCTTGCCCCTGCTGAGTCATCTGCAGGAGTCACCACCAAACATCCTCGACATCGTCCAGGATGCACCTGCATAGTGTGCATCCAGCCTCCAAGTGGGAAAGGGAGACATAAGCCGACATGTACTTGCAATGTGTGCATGACCGTGAAACGTCGTTTCAAAACCCTTATGATGCGTAAAAAGAAACGCCAATCAGAACGTGAAGCAGATGCCACTGAGAAGGAACAGGTACACCAGAGGGATGAATCTGAATTGAATGGCACTACAAGAGACATTACAATTTGTATTGAAAAAGATGACGGCTTAGTCAGAGGCTATCATGAGGTCAGTGAACCTAGTAATGGACATATAGATCTGAATTGTCATCCCAAACGTGAAGACATGTTTGTTGATGAAACAGAAATGAGCATGACTAGTCATCTTGAAACATCTAATTATCTACAATAA 2502 0.4285 MESDICVNTTCGAVTAHQWKKGWLLRSGGFAKLCDNCGSAYENFVFCKKFHLEESGWKECNFCKKPIHCGCIVSKSLFEYLDFGGIGCISCVKSPQLHLMQKNEISSGAIAPSKNVASEPHSIQIDGRISVDSVNEGKLMQLCKIVEASESSHWSQVQSDGIFLTSGQNSQEVKCREVDATFSNVMNPSIQSLTFAKLENNRPAWEVKNMHELPVQPSLCMSLGSPSRNSVLPSAGEIVEGRGEEKPSPFHQGQRSRPILPKPPKTGLTLHQETNKAMLSQPRIARPPAEARGKNQLLPRYWPRITDKELEQLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLRAGDTVIFSRIDPGGKLVIGFRKASNSVDAQDASTSAPSSGISMKDNSCSGVTDNLHSGNSYPVPLQSMKVKKEPYSNGLSEHLHLNNMDDGLPKSENCESITNNDSLQQPIPISEKKRTRNIGSKSKRLLIHSEDAMELRLTWEEAQDLLRPPPNVKPSIVTIEDHVFEEYDEPPVFGKRTFFTTHSSGRQDQWAQCDDCCKWRRLPVDVLLPPKWSCSENEWDDIRSLCSAPEELTRKELENLLRISKGFKKKRTAEDRKSPQEHETSGLDALASLAVLGDNFLAPAESSAGVTTKHPRHRPGCTCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREADATEKEQVHQRDESELNGTTRDITICIEKDDGLVRGYHEVSEPSNGHIDLNCHPKREDMFVDETEMSMTSHLETSNYLQ 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0728 833 MobiDBLite consensus disorder prediction 430 466 - -
Mibi08g0728 833 FunFam B3 domain-containing transcription repressor VAL1 303 430 - -
Mibi08g0728 833 MobiDBLite consensus disorder prediction 242 264 - -
Mibi08g0728 833 Coils Coil 747 767 - -
Mibi08g0728 833 Gene3D - 593 649 - -
Mibi08g0728 833 CDD B3_DNA 323 424 IPR003340 GO:0003677
Mibi08g0728 833 Pfam B3 DNA binding domain 325 425 IPR003340 GO:0003677
Mibi08g0728 833 Gene3D - 303 430 IPR015300 -
Mibi08g0728 833 Pfam CW-type Zinc Finger 595 637 IPR011124 GO:0008270
Mibi08g0728 833 ProSiteProfiles Zinc finger CW-type profile. 590 640 IPR011124 GO:0008270
Mibi08g0728 833 SUPERFAMILY DNA-binding pseudobarrel domain 323 425 IPR015300 -
Mibi08g0728 833 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 828 - -
Mibi08g0728 833 MobiDBLite consensus disorder prediction 746 770 - -
Mibi08g0728 833 MobiDBLite consensus disorder prediction 742 770 - -
Mibi08g0728 833 SMART B3_2 325 426 IPR003340 GO:0003677
Mibi08g0728 833 ProSiteProfiles B3 DNA-binding domain profile. 325 426 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0728 Mibi-ChrMibi08 15422324 15432224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0728 1 761 B3 DNA Binding Superfamily AT2G30470 51.760 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mibi08g0728 B3 1.6e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1238 05 14919996 14920727 Mibi08g0728 08 15422324 15432224 CCT
Mibi08g0728 08 15422324 15432224 Mibi08g0728 08 15422324 15432224 ECH