Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0710 ATGGAGGTATCGTTGCTAAACGTCCTTATAAATGGCATAACCTCGTTTTTGCACTCAAACATTTCCAGAAACCTGGGCTCAGAATCAATCTTGAAGTATTACAAAGCGGAAGCGGAAATACTTAAGTTGTTGAAGCCAATACTTGAAGCCATTGCCAATACTGATTTAGCTTCTGATGAAATGCTTTTGGAGATATTTGAAGAACTGAATAAGGCTATGCATGAACTGAGTGAGCTTTTCGAGAGTTGGCAACTATTGTGTAGCAAAATTTACATTGTTCTGCAAGTTGAATCCTTGATATCCAAGATTCAGATGTTGGCACTCAACATTTTGGTGCAACTAAAGACTTTCCATCAATATCTCCCTAATGAATTAAGTCTTTCACTCATAGAGCTCTGTATTGAAAAGATAAAGAATTTGAGGCAGGAAGAAACATCGATATCACCTACCATCAAGGAAGCTATAATGGAACAAACAGAAGGCTTAGAACCTAGTTCAGAGATCCTTGAAAAACTTGCCGAAAACTTAGGCCTAAGCTCTAATCAAGAGCTTTTAATTGAGGCTGTGACACTTGAAAAGTTGAAGGACAATGCAGAACAGATTGAAAATACTACAGAAGCTGAATACCTCAACCAGATAATTTCTCTTGTAACTTATATGCACGAGAGACTTGTAATGCTCAATGAAGCTCAAATTAGTAGCCCAGTTTCAATACCTCAAGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGAAAGATCCTGTGATTGTGTCAACAGGGCAAACTTACGAACGAATTTTCATTAAGAAATGGATCGATCTCGGGCTTACCGTTTGTCCAAAGACGCGTCAGAGCTTGGCTCATACAAACCTAATACCAAACTATACAGTAAAGGCATTGATTTCACATTGGTGTGAATCAAACAATGTCGAGCTAGTTGATCCTATAATGGCCTCAAATTCAGAAGGTTCTTCGAGTGACATTACGTGTAGCCAAAAGTTGGATATTTTAAGAATATCAGAAACGAATTCTGATAACACATCTGCTAGCGTAGATGAGATGAAGATGGATTCAGATTGCCAAGAATCTATGTCACCACCATCTAGAAGGGAATCTTCCAATGAATTCAGCCAAGATTCCAATGCAATTTTGAATGAAGATTTTCCTCAAGCAATAAAAGGTGATGCCAATAGTGCTCCTCAACCATTGGACAATTCAGTTAATAGCATAGATGCAACTAGGGATGCTAGTCCAAGGACAGATTTTGCTAGTCCTCCATCATTAAAAGCAAGGTCTCAAATCTTAAGTATATGGAAGCAGCCGTTAAAGGATTTAAGGTTAGCATCTCCACCTGTCAGTCCTTCTGGTATTGAAACACAGGTTCTGAATTTGGCTGAAGACTTGGAAAGCTCTTCAATCGATACTCAAAGAGAAGCAACATCAGAACTTCGCCTTCTTTCTAAACACAATATGGAAAACAGAATTGTGATTGCAAATTGTGGGGTCATCAATTTATTAGTGGACTTACTCCAGTCAACTGATACAAAGATCCAAGAAAATGCCGTTACCACGCTTCTAAACTTATCAATCAATGATAATAACAAAGTTGCGATTGCAAATGCCGGCGCAATCGATTCTCTCATTCATGTTCTTGAAACAGGATGTCCTGAAGCGAAGGAGAATTCGGCAGCCACAGTTTATAGCCTATCAATGATAGAAGAAAACAGGATTAGGATAGGGAGATCAGGGGCAATTAAGCCACTGGTTGATTTACTAGCAAATGGAAGTCAAAGAGGGAAAAGAGATGCTTCTACTGCATTGTTCAACTTGTCATTATTTCACGAAAACAAGGGTCGAATCGTACAAGCGGATGCTGTGAAATACCTCGTGGAGTTGATGGATCCAGCAGCCGGAATGGTAGAAAAGGCAGTGGCTGTTTTGGCAAATCTTGCATCAATTCCTGAGGGAAGAAATGCAATTGGTAATGGAGGTGCTATTCCTATTCTAGTTGATGTAATTGAATTGGGTTCTGCTAGAGGCAAGGAAAATGCAGCTGCCACTCTTTTACATATTTGCTCAAACAGTAACAGATTCTTGAGCATGATGATGCATGAAGGAGCTATCCCACCATTAATAGCTTTATCACTATCAGGGACACCAAGGGCCAAAGAAAAAGCACAAGCTCTTCTTAACCACTGTAGAAGTCAAAGACATGGTAATGTTATAAGAGGTTGA 2235 0.3924 MEVSLLNVLINGITSFLHSNISRNLGSESILKYYKAEAEILKLLKPILEAIANTDLASDEMLLEIFEELNKAMHELSELFESWQLLCSKIYIVLQVESLISKIQMLALNILVQLKTFHQYLPNELSLSLIELCIEKIKNLRQEETSISPTIKEAIMEQTEGLEPSSEILEKLAENLGLSSNQELLIEAVTLEKLKDNAEQIENTTEAEYLNQIISLVTYMHERLVMLNEAQISSPVSIPQDFCCPLSLELMKDPVIVSTGQTYERIFIKKWIDLGLTVCPKTRQSLAHTNLIPNYTVKALISHWCESNNVELVDPIMASNSEGSSSDITCSQKLDILRISETNSDNTSASVDEMKMDSDCQESMSPPSRRESSNEFSQDSNAILNEDFPQAIKGDANSAPQPLDNSVNSIDATRDASPRTDFASPPSLKARSQILSIWKQPLKDLRLASPPVSPSGIETQVLNLAEDLESSSIDTQREATSELRLLSKHNMENRIVIANCGVINLLVDLLQSTDTKIQENAVTTLLNLSINDNNKVAIANAGAIDSLIHVLETGCPEAKENSAATVYSLSMIEENRIRIGRSGAIKPLVDLLANGSQRGKRDASTALFNLSLFHENKGRIVQADAVKYLVELMDPAAGMVEKAVAVLANLASIPEGRNAIGNGGAIPILVDVIELGSARGKENAAATLLHICSNSNRFLSMMMHEGAIPPLIALSLSGTPRAKEKAQALLNHCRSQRHGNVIRG 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0710 744 CDD RING-Ubox_PUB 242 284 IPR045210 -
Mibi08g0710 744 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 583 625 IPR000225 GO:0005515
Mibi08g0710 744 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 501 543 IPR000225 GO:0005515
Mibi08g0710 744 MobiDBLite consensus disorder prediction 361 377 - -
Mibi08g0710 744 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 624 665 IPR000225 GO:0005515
Mibi08g0710 744 MobiDBLite consensus disorder prediction 392 428 - -
Mibi08g0710 744 FunFam RING-type E3 ubiquitin transferase 237 312 - -
Mibi08g0710 744 Coils Coil 181 211 - -
Mibi08g0710 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 312 IPR013083 -
Mibi08g0710 744 SMART arm_5 572 612 IPR000225 GO:0005515
Mibi08g0710 744 SMART arm_5 490 530 IPR000225 GO:0005515
Mibi08g0710 744 SMART arm_5 531 571 IPR000225 GO:0005515
Mibi08g0710 744 SMART arm_5 653 693 IPR000225 GO:0005515
Mibi08g0710 744 SMART arm_5 613 652 IPR000225 GO:0005515
Mibi08g0710 744 MobiDBLite consensus disorder prediction 399 415 - -
Mibi08g0710 744 Pfam Armadillo/beta-catenin-like repeat 492 529 IPR000225 GO:0005515
Mibi08g0710 744 Pfam Armadillo/beta-catenin-like repeat 574 611 IPR000225 GO:0005515
Mibi08g0710 744 ProSiteProfiles U-box domain profile. 237 311 IPR003613 GO:0004842|GO:0016567
Mibi08g0710 744 MobiDBLite consensus disorder prediction 344 377 - -
Mibi08g0710 744 FunFam RING-type E3 ubiquitin transferase 451 739 - -
Mibi08g0710 744 PANTHER U BOX DOMAIN-CONTAINING 31 733 - -
Mibi08g0710 744 Pfam U-box domain 238 308 IPR003613 GO:0004842|GO:0016567
Mibi08g0710 744 SUPERFAMILY ARM repeat 464 733 IPR016024 -
Mibi08g0710 744 SUPERFAMILY RING/U-box 235 315 - -
Mibi08g0710 744 Gene3D - 446 742 IPR011989 -
Mibi08g0710 744 SMART Ubox_2 241 304 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0710 Mibi-ChrMibi08 14644568 14647793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0710 1 744 U-box Gene Family AT5G67340 47.995 0.0 633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g1205 05 14382642 14386599 Mibi08g0710 08 14644568 14647793 CCT