Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0661 ATGTCAAGCAATGCAATAACTCTCTTTATCTTGTTTCTTAATATCTCCTTGTTTCCATACGTCTATACTTTGAACCAGGAAGGCCTCTCCCTACTTTCATGGCTTTCAACTGTAAATTCCTCTGATTCCGCTACTTTCTTCTCTTCATGGAATCCAACCGACAAAAGTCCTTGCAAATGGGATTACATAAGATGTTCCAAATATGGGTTTGTTTCAGATATTGTAATAACATCTATTAATATTCGTAGCAGCTTCCCAACGCAACTCCTCTCTTTTGGTCACCTCACTACTCTTGTCATCTCAAATGGAAATCTTTCTGGTGAGATTCCAAGTTCAATAGGAAACTGGTCATCTCTGGTTTCTTTGGACCTTAGCTTCAATGCTTTATCAGGAACCATTCCTGCAGAAATAGGAAAGTTATCCAATCTGCAGTGGTTGAAATTAAATTCAAATTCCTTGCATGGTGAAATTCCAACAGAAATTGGGAACTGTTCCAAGCTTCGTCAGCTGGAATTGTATGACAACCAGCTCTTTGGCAAGATTCCTGGAGAGATAGGCCATTTGAAAGATCTAGAAATATTTCGAGCAGGTGGAAATCAGGGAATCCAAGGTGAAATTCCAATGCAGATTTCAAACTGCAAAGCTCTCACTTTATTGGGTCTAGCAGATACTGGGATTTCAGGGGAGATTCCATCAAGTATAGGAGAACTTAAGAATCTCAAGACACTTTCTGTCTACACAGCAAACCTCACAGGTCATATCCCACCAGAGATTCATAATTGCTCATCCTTGGAGAATTTGTTTCTGTATGAAAATCAGCTTTCTGGTGACATTCCTTATGAATTGGGTTCCATGAAAAGCCTAAGGAGAGTAATGCTATGGCAGAACAATTTAACCGGCACCATTCCAGAAAGTCTAGGGAATTGTACAAGTCTGATGGTTGTAGATTTTTCTTTGAATTCCTTGGAAGGTGAGCTCTGTGTGAGTATCAGAAATTTGCTCTTACTGGAGGCACTTCTTCTCTCTGATAATAACTTTTCTGGAGAAATACCTTCGTTTATTGGTAATTTTTCCAGACTGAAGCAGCTTGAATTAGACAACAATAGATTCTCTGGAAAGATTCCACCTGTTATGGGACAGCTGAAGGAACTCACCTTGTTCTATGCTTGGCAGAACCAACTCTATGGAAGCATACCGACAGAGTTATCCAACTGTGAGAAACTTGAAGCACTTGATCTCTCACACAATTTCCTCACAGGGTCAATTCCAAGTTCTCTTTTTCATCTAGAGAACTTAACTCAAATATTGTTGATATCAAATAGACTTTCAGGTCAACTTCCACCAGATATTGGTAGCTGCACCAACTTAGTCAGGCTACGGTTGGGATCAAACAACCTCAGTGGTCCAATTCCACCAGAAATAGGTCTTTTAAGAAGATTGAGCTTTCTTGAATTGTCAGATAATTTACTCAGTGGAGAAATTCCCAACCAAATTGGCAAATGCAATCAGCTACAAATGCTTGACTTGCACAAGAATCAGCTGCAAGGAACAATTCCTTCCTCATTTGAGTTCCTACTTGTTCTTAATGTCTTAGATCTTTCTTCAAACAGAATAACTGGAAGCATTCCCCAAAAATTGGGCAAGCTTACATCTTTAAATAAGCTGATGCTCAGTGGCAACAGCATTACAGGTTTGATCCCTCAGTCGCTGGGTCTTTGTAAGAACTTGCAGTTGCTGGATATTAGCAACAACAGGATCTCTGGTTCCATCCCAGATGAGATTGGCCAATTGCAAGGACTTGATATCCTCTTGAACTTGAGTTGGAACTCTATAACAGGTCCCATTCCAGAGAGCTTCTCAAATATCTCAAAACTTTCCAACTTGGACCTTTCCCACAACAAGCTGACAGGCAGCCTCAGAATACTGGGTAGCCTTGACAATTTAGTGTCTTTGAACGTCTCCTACAATAGTTTTTCTGGTTCACTCCCAGATACAAAGTTCTTTCATGATCTCCCTACTGCTGCGTTTGCTGGTAACCCTGAGCTCTGCATTAGCAAGTGTGACATGAATCAAAATCACCAAGGCATCAAGTCAGTAAGAAATGTTATTATTTACACTTTTCTTAGTGTTATTTTAACAGCTATGTTTGTGACTTTCGGAGTAATTTTCGCTCTGAGAATTCATGGGTCCACATTTGAGAGGAAATTTGATGAAGAAAGTGAAATGGAATGGACTTTTACTCCATTCCAAAAACTTAACTTCTCAATCAATGACATTCTCACAAAGTTATCAGATTCAAATGTTGTAGGAAAGGGTTGCTCAGGGATTGTTTATCGAGTAGAGACTCCAATGAGACAGATAATTGCAGTGAAGAAGCTCTGGCCAATAAAGAATGATGAGCCACCGGAGAGAGATTGGTTTTCTGCAGAGGTTCAGACGTTGGGATCAATAAGACATAAAAATATAGTCAGGCTTCTAGGATGCTGTAACAATGGAAGAACGAGACTGCTCTTATTTGATTACATAAGCAATGGGAGTTTGTGTGGTTTGCTCCATGAGAAGAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGAGCAGCTCATGGTTTAGAATATCTGCATCATGATTGTATACCTTCAATTGTCCATAGGGACATTAAGGCTAACAACATCTTGGTAGGACCACAATTTGAAGCTTTCATTGCAGATTTTGGTCTTGCAAAACTGGTGGATTCCTCCGAGTGTTCAAAAGCCTCGGCCATAGTTGCAGGCTCTTATGGGTACATAGCTCCCGAATATGGATATAGCCTAAGGATCACAGAGAAGAGTGATGTGTATAGTTATGGTGTGGTGCTTCTGGAGGTTTTGACTGGGATGGAGCCTACTGATAATAGAATTCCAGAGGGTGCACACATAGTCACTTGGGTTAACATGGAAATCAGAGAGAAGAAAAGGGAATTCACATCAATTCTTGACCAGCAACTAGTATTGCAATGTGGTACTAGAACGCAAGAGATGCTTCAAGTTCTAGGGGTGGCTCTCTTATGTGTAAATCCATCCCCAGAAGAACGACCCACCATGAAAGATGTAACAGCAATGCTCAAGGAGATCAGACATGAAACTGACAATTTTGAGAAACAAAGTTTTCTCCAAAAAGGGGCAATCACCAATCCAAAAGTCGCAGTTCATTGTTCGAGTTTCTCCAGATCATGTGAACCACTAATAGAATCATCCTCGTCGTCATCTTCTTCCTAA 3267 0.4028 MSSNAITLFILFLNISLFPYVYTLNQEGLSLLSWLSTVNSSDSATFFSSWNPTDKSPCKWDYIRCSKYGFVSDIVITSINIRSSFPTQLLSFGHLTTLVISNGNLSGEIPSSIGNWSSLVSLDLSFNALSGTIPAEIGKLSNLQWLKLNSNSLHGEIPTEIGNCSKLRQLELYDNQLFGKIPGEIGHLKDLEIFRAGGNQGIQGEIPMQISNCKALTLLGLADTGISGEIPSSIGELKNLKTLSVYTANLTGHIPPEIHNCSSLENLFLYENQLSGDIPYELGSMKSLRRVMLWQNNLTGTIPESLGNCTSLMVVDFSLNSLEGELCVSIRNLLLLEALLLSDNNFSGEIPSFIGNFSRLKQLELDNNRFSGKIPPVMGQLKELTLFYAWQNQLYGSIPTELSNCEKLEALDLSHNFLTGSIPSSLFHLENLTQILLISNRLSGQLPPDIGSCTNLVRLRLGSNNLSGPIPPEIGLLRRLSFLELSDNLLSGEIPNQIGKCNQLQMLDLHKNQLQGTIPSSFEFLLVLNVLDLSSNRITGSIPQKLGKLTSLNKLMLSGNSITGLIPQSLGLCKNLQLLDISNNRISGSIPDEIGQLQGLDILLNLSWNSITGPIPESFSNISKLSNLDLSHNKLTGSLRILGSLDNLVSLNVSYNSFSGSLPDTKFFHDLPTAAFAGNPELCISKCDMNQNHQGIKSVRNVIIYTFLSVILTAMFVTFGVIFALRIHGSTFERKFDEESEMEWTFTPFQKLNFSINDILTKLSDSNVVGKGCSGIVYRVETPMRQIIAVKKLWPIKNDEPPERDWFSAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDYISNGSLCGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCIPSIVHRDIKANNILVGPQFEAFIADFGLAKLVDSSECSKASAIVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDNRIPEGAHIVTWVNMEIREKKREFTSILDQQLVLQCGTRTQEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHETDNFEKQSFLQKGAITNPKVAVHCSSFSRSCEPLIESSSSSSSS 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0661 1088 SUPERFAMILY Protein kinase-like (PK-like) 745 1046 IPR011009 -
Mibi08g0661 1088 Pfam Leucine Rich Repeat 604 621 IPR001611 GO:0005515
Mibi08g0661 1088 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Mibi08g0661 1088 Pfam Leucine Rich Repeat 575 595 IPR001611 GO:0005515
Mibi08g0661 1088 SMART serkin_6 763 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g0661 1088 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Mibi08g0661 1088 Gene3D Phosphorylase Kinase; domain 1 728 841 - -
Mibi08g0661 1088 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Mibi08g0661 1088 Coils Coil 1031 1051 - -
Mibi08g0661 1088 SUPERFAMILY L domain-like 41 395 - -
Mibi08g0661 1088 Gene3D Ribonuclease Inhibitor 327 422 IPR032675 -
Mibi08g0661 1088 Gene3D Ribonuclease Inhibitor 228 326 IPR032675 -
Mibi08g0661 1088 Gene3D Ribonuclease Inhibitor 423 526 IPR032675 -
Mibi08g0661 1088 Gene3D Ribonuclease Inhibitor 598 691 IPR032675 -
Mibi08g0661 1088 Gene3D Ribonuclease Inhibitor 140 227 IPR032675 -
Mibi08g0661 1088 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Mibi08g0661 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Mibi08g0661 1088 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Mibi08g0661 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Mibi08g0661 1088 SUPERFAMILY RNI-like 293 662 - -
Mibi08g0661 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 692 - -
Mibi08g0661 1088 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Mibi08g0661 1088 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Mibi08g0661 1088 Gene3D Transferase(Phosphotransferase) domain 1 842 1062 - -
Mibi08g0661 1088 SMART LRR_typ_2 477 501 IPR003591 -
Mibi08g0661 1088 SMART LRR_typ_2 645 678 IPR003591 -
Mibi08g0661 1088 SMART LRR_typ_2 140 164 IPR003591 -
Mibi08g0661 1088 SMART LRR_typ_2 549 572 IPR003591 -
Mibi08g0661 1088 SMART LRR_typ_2 357 381 IPR003591 -
Mibi08g0661 1088 SMART LRR_typ_2 525 548 IPR003591 -
Mibi08g0661 1088 SMART LRR_typ_2 429 453 IPR003591 -
Mibi08g0661 1088 SMART LRR_typ_2 285 309 IPR003591 -
Mibi08g0661 1088 SMART LRR_typ_2 573 597 IPR003591 -
Mibi08g0661 1088 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Mibi08g0661 1088 PRINTS Leucine-rich repeat signature 622 635 - -
Mibi08g0661 1088 PRINTS Leucine-rich repeat signature 119 132 - -
Mibi08g0661 1088 Pfam Protein kinase domain 766 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g0661 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Mibi08g0661 1088 PANTHER RECEPTOR-LIKE PROTEIN 55 432 1043 - -
Mibi08g0661 1088 Gene3D Ribonuclease Inhibitor 527 597 IPR032675 -
Mibi08g0661 1088 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Mibi08g0661 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1056 - -
Mibi08g0661 1088 ProSiteProfiles Protein kinase domain profile. 763 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g0661 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0661 Mibi-ChrMibi08 12635318 12638743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0661 22 1076 Receptor kinase-like Gene Family AT5G56040 46.281 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mibi08g0661 Pkinase 8.7e-41 CL0016