Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0660 ATGAGCTTGTCTAGGATATGTGTTAAGAATCTACCAAAATACGTTGCAGAGGATCGTCTACGGGACTTCTTTTCACAGAAAGGAGAAATAACAGATGTAAAGCTTATGCGCACCAAAGATGGTATAAGTCGGCAATTTGGTTTTATTGGGTTTCGTACAGAGGATGAAGCCAATGAAGCAATAAAATATTTCAATAGATCCTACCTTGACACCTGTAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGTGATCCAGATATTCCTCGCCCATGGAGTCGACATTCATTGAAGAAAGGGGTAAATGTGATCCATGGTGGGAAGAAAGATGCTGAAAATAGAAGTAAGGAAAACATGATCCATGGTGGGAAGAAAGATGCTGAAAATAGAAGTAATGCTAAGGCACAAAGAGGCGGAGAAAATTTGAAGGAGAGCTCTGATGTTGATGACCCACAGCTTCAAGAATTCCTTCAGGTTATGCAGCCTCGGGCTAAGTCAAAATTGTGGGCTAATGATACATTATCAGTGTTGGATAATGTTAGTGAGAAGCGAAAAATGTCTGGGAATAGAAGCAAGGATCTTTCAGTTCCAAAGCATGATGAGTCCTCTCAAAGTGGCTCATTAGATGATGGATCCACAGATGGCTCATTAGATGAAGGGTCCTCAGATTGTCATGAATCTGAGAAACCAAATAAGCTTGTCCATGATGATGCCATTTCAGATATGGAATATTTCAAGAGTCGAGTGACAAAGGAGTGGTCTGATTCTGAAAATAGTGATGATGAAGCAGAAAAGAGTGCCTTTGTGAGCAGTGATGACGAAAATGAAGAAGACAATGATAGTCATGGTGACGAGGATGAAAAAAATTGTGATGATAAATCTGTGAAAGGAAATGGAAGATGTGTTGCTCAAAATTTAGACCTGAATGAGGATGGTGACCCTGGAAAGATTGAAGTGAAAGGCCCTTCTAATTCTTCTGGTGATGAATTACCTGAGCTAGGGGTGCCTACATCATGTTTGGAAAATGAGAAAGGAGTTTTTGAGTCTTGTCGACTGTTTGTTCGCAATCTGCCCTATACAGCCACTGAGGAGGATCTTGAAGAACACTTCAGCAAGATTGGCACTGTCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAAAGGTCCAAAGCAATGGCATATATTCTTTACACACTTCCAGAATTTGCAGCCAGGGCACTAGAAGAGTTAGACAATACAATTTTCCAAGGAAGATTACTGCATGTTTTGCCAGCCATGCAAAGACCTTCAGACAGCAAGGAAAAGAATACATTGATAGACCAAAGATCCACAACTTTTAAGAAGCAGAGAGAGGAAAAGCGGAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTATTCATGCGCCCTGACACTGTTGTTGAAAACATTGCTCGTAAATATGGTGTAAGTAAAAGTGATTTACTTGACCGAGAAGCTGATGACCTTGCTGTGCGTATTGCTTTGGGAGAAACTCAAGTGATCGCAGAGACAAAAAAGGCCCTTAAAAATGCTGGCGTGAATGTGGAGTCTTTGGAGGAATTTGCCAATGGCCAAAAAGTTGGTGTGAAAAGAAGCAAACATGTGCTTTTAGTGAAGAACTTGCCATATGGTTCCTCAGAAAATGAACTAGCAAAGATGTTTGGGGAAGTTGGGAGTTTGGACAAAATAATTCTGCCTCCAACAAAGACATTGGCCTTGGTTGTCTACCTTGAACCAGCTGAAGCTAAAAAAGCTTATAAACGTTTAGCTTACAGGCGTTTCAAAGATGCACCATTGTATTTGGAATTTGCTCCACCCAATGTACTTAGCCAAAGTTTAACGTCTGAGAACGATGGAAAGAGTGGTGCAGTTGGTGAAAAGGAGGCCAAACGGCTGATATTGGAACAACATCTGGAAGGAGTATTAGATATGGACATTGATCAGGACAGAGTTGAGGCACGGTCTCTATTTGTCAAGAATCTCAACTTCAGGACCTCAGATGAGAGTTTGAAGAAGCATTTTAGTGAACATGTGGAAGAGGGAAGAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGAAAGCAGGTTTCTATGGGATTTGGATTTATCGAATTTGATTCTGTGGAGACTGCTACAAATGTTTGCAGAGATTTTCAGGGGACTGTTTTGGATGGGCATGCACTTATTTTACAACTCTGTCATGCCAAGGACAAACAAGTACCAAAAACAGTTGAGAAGGATAAAAGCTCAACAAAATTACTTGTTAGAAATGTAGCTTTTGAGGCGACAGAGAAGGAATTGAGGCAGTTGTTCAGCCCATTTGGCCAGATCAAGAGTTTAAGGTTGCCAATGAAGTTTGGAAGTCATAGAGGTTTTGCTTTTGTGGAATATGTTACACAACAAGAGGCACAAAATGCACTAAAAGCTCTTTCAAGCACCCACTTGTACGGCAGGCATCTGGTGTTAGAGAGAGCAAAGGAAGGCGAGAGTTTGGAGGAACTACGGGCTCGAACAGCTGCACAATTTAGTGATGAACAAAATGGATTGCAAAAGTTTTCCAAGAAAAGGAAGTTCCCGTCAATCTTGGATGAAGGGAAGATGGAGTTTGAGAGAATTGCTGATTAG 2661 0.41 MSLSRICVKNLPKYVAEDRLRDFFSQKGEITDVKLMRTKDGISRQFGFIGFRTEDEANEAIKYFNRSYLDTCRITCEVARKVGDPDIPRPWSRHSLKKGVNVIHGGKKDAENRSKENMIHGGKKDAENRSNAKAQRGGENLKESSDVDDPQLQEFLQVMQPRAKSKLWANDTLSVLDNVSEKRKMSGNRSKDLSVPKHDESSQSGSLDDGSTDGSLDEGSSDCHESEKPNKLVHDDAISDMEYFKSRVTKEWSDSENSDDEAEKSAFVSSDDENEEDNDSHGDEDEKNCDDKSVKGNGRCVAQNLDLNEDGDPGKIEVKGPSNSSGDELPELGVPTSCLENEKGVFESCRLFVRNLPYTATEEDLEEHFSKIGTVSQVHLVVDKDTKRSKAMAYILYTLPEFAARALEELDNTIFQGRLLHVLPAMQRPSDSKEKNTLIDQRSTTFKKQREEKRKAAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVIAETKKALKNAGVNVESLEEFANGQKVGVKRSKHVLLVKNLPYGSSENELAKMFGEVGSLDKIILPPTKTLALVVYLEPAEAKKAYKRLAYRRFKDAPLYLEFAPPNVLSQSLTSENDGKSGAVGEKEAKRLILEQHLEGVLDMDIDQDRVEARSLFVKNLNFRTSDESLKKHFSEHVEEGRILSVKVKKHLKNGKQVSMGFGFIEFDSVETATNVCRDFQGTVLDGHALILQLCHAKDKQVPKTVEKDKSSTKLLVRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVLERAKEGESLEELRARTAAQFSDEQNGLQKFSKKRKFPSILDEGKMEFERIAD 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0660 886 Gene3D - 2 143 IPR012677 -
Mibi08g0660 886 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 664 747 IPR000504 GO:0003723
Mibi08g0660 886 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 351 421 IPR000504 GO:0003723
Mibi08g0660 886 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 765 832 IPR000504 GO:0003723
Mibi08g0660 886 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 666 740 IPR000504 GO:0003723
Mibi08g0660 886 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 546 608 IPR000504 GO:0003723
Mibi08g0660 886 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 74 IPR000504 GO:0003723
Mibi08g0660 886 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 349 427 IPR000504 GO:0003723
Mibi08g0660 886 MobiDBLite consensus disorder prediction 104 149 - -
Mibi08g0660 886 CDD RRM3_RBM19_RRM2_MRD1 350 423 - -
Mibi08g0660 886 Gene3D - 536 641 IPR012677 -
Mibi08g0660 886 Gene3D - 755 865 IPR012677 -
Mibi08g0660 886 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 544 616 IPR000504 GO:0003723
Mibi08g0660 886 CDD RRM1_MRD1 4 79 - -
Mibi08g0660 886 PANTHER RNA-BINDING MOTIF PROTEIN 14B 752 861 - -
Mibi08g0660 886 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 81 IPR000504 GO:0003723
Mibi08g0660 886 SUPERFAMILY RNA-binding domain, RBD 758 841 IPR035979 GO:0003676
Mibi08g0660 886 FunFam RNA-binding motif protein 19 3 102 - -
Mibi08g0660 886 MobiDBLite consensus disorder prediction 430 459 - -
Mibi08g0660 886 FunFam Multiple RNA-binding domain-containing protein 1 535 637 - -
Mibi08g0660 886 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 763 839 IPR000504 GO:0003723
Mibi08g0660 886 CDD RRM4_RBM19_RRM3_MRD1 544 615 - -
Mibi08g0660 886 SUPERFAMILY RNA-binding domain, RBD 657 749 IPR035979 GO:0003676
Mibi08g0660 886 MobiDBLite consensus disorder prediction 104 132 - -
Mibi08g0660 886 FunFam Nucleotide/nucleic acid binding protein 660 755 - -
Mibi08g0660 886 Gene3D - 177 438 IPR012677 -
Mibi08g0660 886 MobiDBLite consensus disorder prediction 182 204 - -
Mibi08g0660 886 Gene3D - 661 754 IPR012677 -
Mibi08g0660 886 SUPERFAMILY RNA-binding domain, RBD 348 616 IPR035979 GO:0003676
Mibi08g0660 886 SMART rrm2_1 764 835 IPR003954 GO:0003676
Mibi08g0660 886 SMART rrm2_1 5 77 IPR003954 GO:0003676
Mibi08g0660 886 SMART rrm2_1 665 743 IPR003954 GO:0003676
Mibi08g0660 886 SMART rrm2_1 350 423 IPR003954 GO:0003676
Mibi08g0660 886 SMART rrm1_1 545 612 IPR000504 GO:0003723
Mibi08g0660 886 SMART rrm1_1 764 835 IPR000504 GO:0003723
Mibi08g0660 886 SMART rrm1_1 665 743 IPR000504 GO:0003723
Mibi08g0660 886 SMART rrm1_1 350 423 IPR000504 GO:0003723
Mibi08g0660 886 SMART rrm1_1 5 77 IPR000504 GO:0003723
Mibi08g0660 886 FunFam Multiple RNA-binding domain-containing protein 1 757 863 - -
Mibi08g0660 886 MobiDBLite consensus disorder prediction 433 459 - -
Mibi08g0660 886 MobiDBLite consensus disorder prediction 218 271 - -
Mibi08g0660 886 CDD RRM6_RBM19_RRM5_MRD1 763 837 - -
Mibi08g0660 886 CDD RRM5_RBM19_like 664 745 IPR034423 -
Mibi08g0660 886 MobiDBLite consensus disorder prediction 179 329 - -
Mibi08g0660 886 SUPERFAMILY RNA-binding domain, RBD 4 91 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0660 Mibi-ChrMibi08 12579265 12594712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0660 652 855 Eukaryotic Initiation Factors Gene Family AT1G49760 28.704 2.96e-12 68.6