Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0645 ATGACGTCAGCAAATCTCTCTTCTCCAGTATCTTCTGCCGTACAATCCATCCATCGTTCATTGACTCATCTCTGCGACCACGAACGCCATTACTCATTCGAAAACCCTAGAAAATTCTCTGAGTTTGCCCGGCGGCTTCAAATTGTCGTCAACCAACTTCTCCTTTCGTTTCAATCTCCGTCGCCGGAAACCTTACCGACGGCGGTGCAGACCGCCATGAAAGGAATCTCCGGCGATCTTTCCAAGGCTGTGGAAGTTGTTTCGGTTTATGAGAAAAGTAGTAAGATATTTGTATTGATTAACTGCAAATCGCTATGTTTATCGCTTGAGGAGCACACTTTCTCCATAGGAGGATGGATTGCTTTGCTCGATGAGGCTCTTCAAGATGATCCTGACCTTCAAAAGAAAGCTTCTGATCTCTCCAGAGACATGAAGCTCGCTCAGTTCAGAGTTACAGAGAACGAAGAGAGAGTTCAATGTACGTTGGAAAAAGAAGGGTTAGGAAGACCAACAACCAAGGCGGTACAGAGTGCTATTGTCATGGATTTAGCTCGCGCTTTGGGGATTGACCCTGGTGATTATACAGAGTTTTCTAACGAAATAAAGCTGTTCAAGAATGACTTATTGCGGTCAAGTTCTGTATCACAGCGGCGAATTTTAGCTTCCCTTGAAAGGATTTTGAATAACTGGTCTGTTGAACCTGACATTGAGACTAGAAAATTGGACTTGGACCTTGAAGATGATGCATCAATTTCTCCCTTCAAAAATTTTCTTTGCCCACTGACCAAGGAAGTGATGAAGAATCCTGTGGTTTTGGAAACTTCTCAGACCTATGAACGGACTGCTATAGAGTATTGGTTCGATAGATGTATTCAAGATGCTCGTGATCCAACTTGTCCTGTAACTGGGAATGTTCTTAAATCCATGGAAATGAAACCCAATATTGGATTGGCTGGGGCAATAGAAGAGTGGGTTAATAGGGTTGTGGACTATCAAGTCAAATCTGCTGCTGAACACTTGAATGAGGAGCCACTTTGTATAGATCATGTTGAACGAGCTTTGGATAATATTTATAGGGTTTCAGAAGACCATCCTCCTAGCAGACATTTAATCAGAAATTCTGGAATTATACAAATGATAGTGCAGCTTCTTACTAATAGCTCAAAAGTTATTGGATCACGGTTGAGAAGTAAAGCTTTTATGACATTAGTTAGCATGTCTAAGGATGAAGAAAGCAAGAAAATAATGCTTGAAGGAAGTATCACAAGATTGGCTGTACATAGTCTTACTGGTAGCTCAGAGAAAGAGAGGGAGTTTGCTGTGAAGTTATTACTGGAGTTCTCCAGTGATGAAGCTTATTGCATAGGAGTTGCATCAGAGAAAGGTGCATTGGTTCTTCTCACAAGTATGGCTGGAAATCTAGAGTTTCCTGCTTTGTCCAAGTTAGCTGAGGAAGTTTTAAGGCAGTTGGAGAGGGTGGAGGATAATGTGCAACGTTTAGCAGCATCTGGAAGATTTGAACCTTTACTTTCACGGCTGCATATTGGTCCTGATGCTGTAAAGATAGAGATGGCATCTCTGCTCGGAAGGATGACCTTGACAAACAGCAATAAAGAACAAATTGCTAGGCAAAGTGCTGGAGTACTTGTTGACCTGTTGTCGAAGCCAGAAGGAAGAGAACCAAGTCTGGAAGCATTATATAACTTGTCGGGATTGGATGACAATGCAACCATACTTGTCGAGTCTCCAGTCTTTCCATCTCTTATTAATGTTCTTTTTGATGACAAGGAGACCTCAAATGAAATTAAAACATTAGCCGCTTCAACAATTGCAAATATAGTCTCAAAGCCAGGGCGTTGGGAATTAGCATCTGCCGACATGAAGGGGAGTTCAATGCAGTCAGAAAATATAGTTTTCAGACTTCTACAACTTCTAAACTCAGTGTCATCTCAATGTCAAGTATATGTTCTTCGCATTCTATATGGAATAACATCATCTCCTCAGGCATCAGAGTCAGTAGCTTTGCATATAAAATCTGGGGATGGTTTTAAAACGGTTACACAATTTCTTGAAAACCCAGAAGTCGAACTCAGAATATATGCTTTGAAGCTTTTGAGACTACTATCTGAACTATCCAGTCAAGATCTTGGAAATGAGCTGAGACTTTCCAACAAGCTAACCATCCTCAAAGAAAAGATGTTAGACGATCAATCTGCAGAGGATGAGAGAGCAACTGCAGCATGTATACTTGCCAACCTTTCTTTGACAGGGAATGAAGTAAAATTACTTTTAGGAGGTGATTTCGTTAAATGGATCGTGACCACTCTCAAGAACCAGAGGCGCAGCTCCAATGCAAGGATTTCACAGACTGCAATAAGCTTGCAGGAAGGTCTTCTTGGTCTCTTACTTCACTTCACTAGGAATCTTGACGAGCAAACCCTTACCATTGTTAGAGAAAATCGTCTCATGACCATTTTCTGTGAACAGTTGGAATATGCGTCCAAACCAAAGGTAAAAATACTAGCTGCTCTTGGATTAAAAAGCTTATCAGAAACTGGTAGGACAGTTCTTTCTAGGGACACTGAACCCTCACCTTCTTATGGATTCTTCCCTTCCTTCCTGTTCATTTGTGGGAGGAGCTCTTATAAAAATCTTTCGTGTCCGATTCATGACAGTCCTTGCGAGGAGGATAGTCAATTGTGCCTGCTAATGAGCGACTGTATAAAGCCTCTAAATGATCTCTTAAATGATAACAATGAAACTAGTGTTCAAATTGCTGCAGTGGAGGCTTTGTCAACGCTAATGTTGGATTATTCATCAAATGCTTTCAAGAGAGCAGCTGATGAGCTTGAGAAATTGGGTGTGGTTGATTCTGTGATTAATCTTTTCACAGAGGCTAGATCAGGCGGAGAGCTTCAAGAGAAGACAGTTTGGATCATAGAGAAAATATTGAGAGTGGAAAACCACATCCCAAAGTATTCACTTAATCAGTCTCTTGTGAGGGGTTTGGTTGAAGCCTTTAAGCATGGGAATCCCAACACCAAGGTGCTTGCTCAACATGCTTTAAGCTGCCTAAAGCAAATATCTGTTCTAAGTGAGAAGGCATCAAGTCAACCTAGAGCTAGGAAGTAG 3132 0.4141 MTSANLSSPVSSAVQSIHRSLTHLCDHERHYSFENPRKFSEFARRLQIVVNQLLLSFQSPSPETLPTAVQTAMKGISGDLSKAVEVVSVYEKSSKIFVLINCKSLCLSLEEHTFSIGGWIALLDEALQDDPDLQKKASDLSRDMKLAQFRVTENEERVQCTLEKEGLGRPTTKAVQSAIVMDLARALGIDPGDYTEFSNEIKLFKNDLLRSSSVSQRRILASLERILNNWSVEPDIETRKLDLDLEDDASISPFKNFLCPLTKEVMKNPVVLETSQTYERTAIEYWFDRCIQDARDPTCPVTGNVLKSMEMKPNIGLAGAIEEWVNRVVDYQVKSAAEHLNEEPLCIDHVERALDNIYRVSEDHPPSRHLIRNSGIIQMIVQLLTNSSKVIGSRLRSKAFMTLVSMSKDEESKKIMLEGSITRLAVHSLTGSSEKEREFAVKLLLEFSSDEAYCIGVASEKGALVLLTSMAGNLEFPALSKLAEEVLRQLERVEDNVQRLAASGRFEPLLSRLHIGPDAVKIEMASLLGRMTLTNSNKEQIARQSAGVLVDLLSKPEGREPSLEALYNLSGLDDNATILVESPVFPSLINVLFDDKETSNEIKTLAASTIANIVSKPGRWELASADMKGSSMQSENIVFRLLQLLNSVSSQCQVYVLRILYGITSSPQASESVALHIKSGDGFKTVTQFLENPEVELRIYALKLLRLLSELSSQDLGNELRLSNKLTILKEKMLDDQSAEDERATAACILANLSLTGNEVKLLLGGDFVKWIVTTLKNQRRSSNARISQTAISLQEGLLGLLLHFTRNLDEQTLTIVRENRLMTIFCEQLEYASKPKVKILAALGLKSLSETGRTVLSRDTEPSPSYGFFPSFLFICGRSSYKNLSCPIHDSPCEEDSQLCLLMSDCIKPLNDLLNDNNETSVQIAAVEALSTLMLDYSSNAFKRAADELEKLGVVDSVINLFTEARSGGELQEKTVWIIEKILRVENHIPKYSLNQSLVRGLVEAFKHGNPNTKVLAQHALSCLKQISVLSEKASSQPRARK 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0645 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 339 IPR013083 -
Mibi08g0645 1043 ProSiteProfiles U-box domain profile. 252 331 IPR003613 GO:0004842|GO:0016567
Mibi08g0645 1043 SMART Ubox_2 256 324 IPR003613 GO:0004842|GO:0016567
Mibi08g0645 1043 SUPERFAMILY ARM repeat 346 669 IPR016024 -
Mibi08g0645 1043 Gene3D - 340 715 IPR011989 -
Mibi08g0645 1043 CDD RING-Ubox_PUB 257 303 IPR045210 -
Mibi08g0645 1043 Coils Coil 483 503 - -
Mibi08g0645 1043 SMART arm_5 572 615 IPR000225 GO:0005515
Mibi08g0645 1043 SMART arm_5 669 710 IPR000225 GO:0005515
Mibi08g0645 1043 SMART arm_5 809 851 IPR000225 GO:0005515
Mibi08g0645 1043 SMART arm_5 894 936 IPR000225 GO:0005515
Mibi08g0645 1043 SMART arm_5 534 571 IPR000225 GO:0005515
Mibi08g0645 1043 SMART arm_5 364 408 IPR000225 GO:0005515
Mibi08g0645 1043 Gene3D - 728 1039 IPR011989 -
Mibi08g0645 1043 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 1032 - -
Mibi08g0645 1043 SUPERFAMILY RING/U-box 247 327 - -
Mibi08g0645 1043 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Mibi08g0645 1043 SUPERFAMILY ARM repeat 641 1025 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0645 Mibi-ChrMibi08 12198819 12203681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0645 254 1028 U-box Gene Family AT1G20780 30.402 6.97e-89 301