Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0625 ATGAATCCCTTAACCCTAGTGAAGCGCATTCAGAATATCAATTCCAAAGAAGCCTCTCTGGGAATCAGCGAGGATGCTTCCTGGCACGCCAAATACAAAGATTCCGCTTATGTCTTCGTCGGTGGCATTCCCTTCGATCTCACTGAGGGTGATCTCCTCGCTGTTTTCGCTCAATACGGGGAAGTGGTTGATGTAAATCTTGTCCGGGACAAAGGTACTGGGAAGTCCAAAGGTTTTGCATTTCTTGCATATGAAGATCAAAGGAGCACAAATCTTGCTGTAGATAATTTGAATGGAGCTCAGGTTTTAGGTCGGGTCATTCGAGTTGATCACGTAACTAAATACAAAAAGAAAGAAGAGGAAGATGAAGAGACAGAGAGGAAGAAAAGGGAGGAACGAGGTGTTTGTCGAGCTTTCCAGAGAGGTGAATGCACACGTGGAGCTAGCTGCAAATTTTCTCATGATGAGCAAAGAGCTGCAAACACAGGTTGGGGTGCCCCTGAGGATGCTAGTTCAAAGTGGGGGCATGACAAATTTGACAGTCACAAAAAAGAGAAAAAATATGGAAATAGTCATGATAAATTCGAAGGAAGAGAACGTGGAAGAGAGAATAGATCTAGGAAGCCAGCTGATGATGAGCTTGAATTAAAGACCAGAGATTCTGATAAAAGGGAAGAAAAGAGGTACAGGAGACAGGATGATGATGATTTTGGTAGTAGGTCAAGGGAAGATCATATTAGCAGGGAAGATAGGAGATCAAGGCAGCACAGAGAGTATGATTCCACATCAAGATCCAGAGAAAATTATGATAGGAAGCAACGGGACAGATCAAACAGACATGACACAGATAGATTAGAGCCAAAAGTAAAATATGATTCCGACAGGAGAGAAGAAAAGGGATCAAGAAGGTAA 912 0.4287 MNPLTLVKRIQNINSKEASLGISEDASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQVLGRVIRVDHVTKYKKKEEEDEETERKKREERGVCRAFQRGECTRGASCKFSHDEQRAANTGWGAPEDASSKWGHDKFDSHKKEKKYGNSHDKFEGRERGRENRSRKPADDELELKTRDSDKREEKRYRRQDDDDFGSRSREDHISREDRRSRQHREYDSTSRSRENYDRKQRDRSNRHDTDRLEPKVKYDSDRREEKGSRR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0625 303 MobiDBLite consensus disorder prediction 161 303 - -
Mibi08g0625 303 Gene3D - 133 278 - -
Mibi08g0625 303 CDD RRM_ist3_like 27 112 IPR045844 GO:0000398|GO:0003723
Mibi08g0625 303 SUPERFAMILY CCCH zinc finger 132 155 IPR036855 GO:0046872
Mibi08g0625 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Mibi08g0625 303 SMART rrm1_1 37 110 IPR000504 GO:0003723
Mibi08g0625 303 Gene3D - 26 132 IPR012677 -
Mibi08g0625 303 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Mibi08g0625 303 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 248 - -
Mibi08g0625 303 SUPERFAMILY RNA-binding domain, RBD 26 116 IPR035979 GO:0003676
Mibi08g0625 303 MobiDBLite consensus disorder prediction 171 303 - -
Mibi08g0625 303 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Mibi08g0625 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Mibi08g0625 303 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Mibi08g0625 303 SMART c3hfinal6 132 156 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0625 Mibi-ChrMibi08 11550056 11553771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0625 38 133 Eukaryotic Initiation Factors Gene Family AT1G71770 30.208 4.09e-06 46.2