Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0597 ATGAACCCTTTAACCCTAGTGAAGCGCATTCAGAATATCAATTCCAAAGAAGCCTCTCTGGGAATCAGCGAGGATGCTTCCTGGCACGCCAAATACAAAGATTCCGCTTATGTCTTCGTCGGCGGCATTCCCTTCGATCTCACCGAGGGTGATCTCCTCGCTGTTTTCGCTCAGTATGTCTCTCCTTTTTCTTTTCGATTGAAAATTAGGTCACTATCCCTCCCTTTTAGCCAATTTTGTTTAGTTGATTGTTTCTCTTCCGATTTCTTCCTGCTGTGTTTGCCGTTCAATTCATGTTCCATTTCCATTACCCATGTTTCATTTAGCGAATTTTGTTGGATGATTTCTGTTGAACTTCTTCCTGCTTTGTTTGTCTTCCAGCTTATGAGCCATTACCTATGATATGGGGAAGTGGTTGACGTAAATCTTGTCCGGGACAAAGGTACTGGGAAGTCCAAAGATAATTTGAATGGAGCTCAGGTTTTAGGTCGGGTCATTCGGGTTGATCACGTAACTAAATACAAGAAGAAAGAAGAGGAAGATGAAGAGACAGAGAGGAAGAAAAGGGAGGAACGAGGTGTTTGTCGAGCTTTCCAGAGAGGTGAATGCACACGTGGAGCTAGCTGCAAATTTTCTCATGATGAGCAAAGAGCTGCAAACACAGGTTGGGGTGCCCCTGAGGATGCTAGTTCAAAGTGGGGGCATGACAAATTTGACAGTCACAAAAAAGAGAAAAAATATGGAAATAGTCATGATAAATTCGAAGGAAGAGAACGTGGAAGAGAGAATAGATCTAGGAAGCCAGCTGATGATGAGCTTGAATTAAAGACCAGAGATTCTGAAAAAAGGGAAGAAAAGAGGTACAGGAGACAGGATGATGATGATTTTGGTAGTAGGTCAAGGGAAGATAGGAGATCAAGGCAGCACAGAGAATATGATTCCACATCAAGATCCAGAGAAAATTATGATAGGAAGCAACGGGACAGATCAAACAGACATGACACAGATAGATCAGAGCCAAAAGTAAAATATGATTCGGACAGGAGAGAAGAAAAGGGATCAAGAAGGTAA 1071 0.4239 MNPLTLVKRIQNINSKEASLGISEDASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYVSPFSFRLKIRSLSLPFSQFCLVDCFSSDFFLLCLPFNSCSISITHVSFSEFCWMISVELLPALFVFQLMSHYLXYGEVVDVNLVRDKGTGKSKDNLNGAQVLGRVIRVDHVTKYKKKEEEDEETERKKREERGVCRAFQRGECTRGASCKFSHDEQRAANTGWGAPEDASSKWGHDKFDSHKKEKKYGNSHDKFEGRERGRENRSRKPADDELELKTRDSEKREEKRYRRQDDDDFGSRSREDRRSRQHREYDSTSRSRENYDRKQRDRSNRHDTDRSEPKVKYDSDRREEKGSRR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0597 356 CDD RRM_SF 38 88 - -
Mibi08g0597 356 Gene3D - 37 156 IPR012677 -
Mibi08g0597 356 SUPERFAMILY RNA-binding domain, RBD 24 94 IPR035979 GO:0003676
Mibi08g0597 356 SUPERFAMILY CCCH zinc finger 191 214 IPR036855 GO:0046872
Mibi08g0597 356 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 60 - -
Mibi08g0597 356 SMART c3hfinal6 191 215 IPR000571 GO:0046872
Mibi08g0597 356 SUPERFAMILY RNA-binding domain, RBD 127 177 IPR035979 GO:0003676
Mibi08g0597 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 194 214 IPR000571 GO:0046872
Mibi08g0597 356 MobiDBLite consensus disorder prediction 230 356 - -
Mibi08g0597 356 MobiDBLite consensus disorder prediction 220 356 - -
Mibi08g0597 356 Gene3D - 174 246 - -
Mibi08g0597 356 ProSiteProfiles Zinc finger C3H1-type profile. 189 216 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0597 Mibi-ChrMibi08 10624376 10627414 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi08g0597 zf-CCCH 7.3e-07 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g0597 08 10624376 10627414 Mibi08g0597 08 10624376 10627414 ECH