Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0525 ATGCTATTTTTAAGTCCTTTCGAGTTGGAGGATTTTGTAACTGCACTGAAGAGTGTTAATCCTAACATATTACTTGGCAACATTCATGTTTCTGTTTTACAAACTCTTAGAAAGCACTTAGAATACCTTTCATATGAGGGTTGCCAATCTGTATCTGATTGCCTAAGAAATTTGAACTGGGATTTGTTTGACCTGGTTACATGGCCCATTTTTATGGCTGAGTATCTTCTGATTCATGGTTCGGGACTTAAAACTGGTTTTGATCTGAAGTACTTAATGTTTGGAGGTGACTACTACAAGCAGCCTGTACATGTAAAGATTGAAATTCTTCAGTGCCTTTGTGATGATATGATGGAAGTGGAAGCTATAATGCTGGAGCTCAACAGAAGATCTTTGGTGATTGAGGCTGATATGAGTTTTGATCAAAGTATGTATTTTGATATATGCAAGAAAAGAAGAGCTCTAATGGACATGTCTGGCAGCTTTGCCATGTCTGAGGAGATTGTTGATGTAACAAATGACTGGAACAGTGATGAATGCTGCCTTTGCAAGATGGATGGAAATTTTATACGTTGTGATGGTTTCCCTGCTGCATTCCACTCCAGGTGTGTGGGGGTTGCAAGTGACCATTTACCTGAAGGCGACTGGTATTGCCCTGAGTGTGCAATCGGCAGACGTAACCCTTGGATGAAACCACAAAAATCACTTCGAGGAGCAGACCTTTTAGGGATTGATCCTCATGGTCGTCTTTATTTTGATAGCTGTGGTTACCTGTTAGTGTCAGAGTCATCTGACATGAGATCCTTGTTCAATTACTACCACATAAATGATCTGCATGTTGTAATTGAAGTGTTAAAAGCGGCTGATGCTTTCTACAGTAGAATATTAATGGCAATCTGCAAGCACTGGGGTATTCCTTTTAACTTAAATGTAGCAGCTGGTAAGGTGGAACTCTCAAATCAAAGTGCTAGCAGGAGCATGCATATGAAGACAGAATACTCTGCTCCATATCCACCCTCAGCACCTTTTCCATCCTTAGAAGCATTCTTGGACAAGAATCAGTCTGCTGACCAAAGAAAGTATGAAGAAACATCTACTGTACCACCTGTTGGCAGAGGAGTTGATACGTAA 1131 0.405 MLFLSPFELEDFVTALKSVNPNILLGNIHVSVLQTLRKHLEYLSYEGCQSVSDCLRNLNWDLFDLVTWPIFMAEYLLIHGSGLKTGFDLKYLMFGGDYYKQPVHVKIEILQCLCDDMMEVEAIMLELNRRSLVIEADMSFDQSMYFDICKKRRALMDMSGSFAMSEEIVDVTNDWNSDECCLCKMDGNFIRCDGFPAAFHSRCVGVASDHLPEGDWYCPECAIGRRNPWMKPQKSLRGADLLGIDPHGRLYFDSCGYLLVSESSDMRSLFNYYHINDLHVVIEVLKAADAFYSRILMAICKHWGIPFNLNVAAGKVELSNQSASRSMHMKTEYSAPYPPSAPFPSLEAFLDKNQSADQRKYEETSTVPPVGRGVDT 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0525 376 Pfam PHD-finger 180 222 IPR019787 -
Mibi08g0525 376 SMART PHD_3 179 222 IPR001965 -
Mibi08g0525 376 Pfam DDT domain 2 38 IPR018501 -
Mibi08g0525 376 ProSiteProfiles DDT domain profile. 1 42 IPR018501 -
Mibi08g0525 376 PANTHER PHD FINGER FAMILY PROTEIN 2 321 - -
Mibi08g0525 376 ProSiteProfiles Zinc finger PHD-type profile. 177 224 IPR019787 -
Mibi08g0525 376 MobiDBLite consensus disorder prediction 354 376 - -
Mibi08g0525 376 SUPERFAMILY FYVE/PHD zinc finger 157 223 IPR011011 -
Mibi08g0525 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 227 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0525 Mibi-ChrMibi08 8534724 8536659 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0525 1 307 PHD Transcription Factor Family AT5G12400 52.273 2.51e-110 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Mibi08g0525 PHD 6.8e-07 CL0390