Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0426 ATGAATGAAAAGCCGAATTCGGAGCCCCAAGAAGAAGAAGGAAAATCATCCAAGAATAATGGAGCTAACGATTCAGCTCCTAAAGATTCAGTTGCAGCTTCAACAGTTCGAGTTTGTGATTTCTGTGGGAAAGAGTTCACTTCTGGGAAAGCCCTAGGAGGTCACAGAAGGCATCACATTCAAGCTCTCAAAAAGATGGAGGCCCAGAAGAATCATCAACCTCCTCCTACTCCTTCAAATCAATATGCCCTAAGAATCAAGCCCAATAATAATAATAATAATATTGGGAATGGGAATGGGAATGGGAATGTCAACAACAACAATTCTCCATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTATATCTTTTCGTTGCTATGTTTGTGACAAGTATTTTCCATCTGAAAAGTCACTGTATGGACACATGAGATCTCATCCAGAGAGAGAATGGAGAGGTATGAACCCTCCTTTCACTTCTTCTTCTTCTGAAGAAGAAAAGGAGATAAGGGATAATGGGGTTTGTTCATCTTCAGCTGGTTCATCATCATCATCATTAGTATTTGTGGATCTTTCTTTATCATGTGCTGGAAGTAGCTGGCTTAAGAAAGATAAGAGAGGAAGGCAAAGCATTGGTGCTGCTGAAGCTGCTGAAACCCTTGTGTTTATTTCTAATCATGGTGAATACCTTGAAGGACGCCCTTTTCCTCCTCCTTCTCCACAAGAAGAAGAAGAAGAAGAAGTACCAGTTAAGAAAAGGAGGATGAAGAGGAATAGTGATGGTTCTCCTTCTTCTTCACCAGATTTGGAGGAGGAATTATTAGAGGATGGTGATGATGGATCACTGGAAGGTGAGAATCATGAATGGCAGATGACAGTGATGAGCTTAATAAAGGCAGCGAAGAAGGTTAAGAAGAACATGAACAAGAAGGAGAAAGTTCCAGAGAAGATGATGGTCAAATCAAAAGGAGAAGATCAATTGGTGATCAAAACTGTGAAGCAAGAAGTAGTAGTGAAGTCACCACCAACACCACCACAAAAATCTGTATGTGACATATGTGGTAAATCTTTCAATTGTTTTCGAGCTTTAGGGGGACACAAATCCAAACACAACAAAGAAAATCATAAGAAAGGCAAGGAAGTTGTGGAGGTGGGAAAAAAACCAGAAGAAGAAGTCAAGGTTTGCAACAATGAAGGAGAAGCGTCTCTGATTTGTAGTGAAGAGAGATTAGTGATAAGTCTGAATAGTACTGATGAGATTAACATGAGTAATGAAGGAGAAGAAGAGGAAGTGATGAGAAAGGCAAGTCATCAATCTGGTGGTCCTAAAATGAGGAATTTTGATTTGAATGTAACTTATGGAGAATGA 1365 0.4029 MNEKPNSEPQEEEGKSSKNNGANDSAPKDSVAASTVRVCDFCGKEFTSGKALGGHRRHHIQALKKMEAQKNHQPPPTPSNQYALRIKPNNNNNNIGNGNGNGNVNNNNSPSPPPPPPPPPISFRCYVCDKYFPSEKSLYGHMRSHPEREWRGMNPPFTSSSSEEEKEIRDNGVCSSSAGSSSSSLVFVDLSLSCAGSSWLKKDKRGRQSIGAAEAAETLVFISNHGEYLEGRPFPPPSPQEEEEEEVPVKKRRMKRNSDGSPSSSPDLEEELLEDGDDGSLEGENHEWQMTVMSLIKAAKKVKKNMNKKEKVPEKMMVKSKGEDQLVIKTVKQEVVVKSPPTPPQKSVCDICGKSFNCFRALGGHKSKHNKENHKKGKEVVEVGKKPEEEVKVCNNEGEASLICSEERLVISLNSTDEINMSNEGEEEEVMRKASHQSGGPKMRNFDLNVTYGE 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0426 454 MobiDBLite consensus disorder prediction 237 258 - -
Mibi08g0426 454 MobiDBLite consensus disorder prediction 1 33 - -
Mibi08g0426 454 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Mibi08g0426 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 347 374 IPR013087 -
Mibi08g0426 454 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 13 68 IPR044653 GO:0003700
Mibi08g0426 454 Gene3D Classic Zinc Finger 3 151 - -
Mibi08g0426 454 MobiDBLite consensus disorder prediction 1 18 - -
Mibi08g0426 454 Pfam C2H2-type zinc finger 123 147 - -
Mibi08g0426 454 Pfam C2H2-type zinc finger 37 59 - -
Mibi08g0426 454 Pfam C2H2-type zinc finger 348 371 - -
Mibi08g0426 454 MobiDBLite consensus disorder prediction 149 181 - -
Mibi08g0426 454 SMART c2h2final6 347 369 IPR013087 -
Mibi08g0426 454 SMART c2h2final6 123 145 IPR013087 -
Mibi08g0426 454 SMART c2h2final6 37 59 IPR013087 -
Mibi08g0426 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Mibi08g0426 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 59 IPR013087 -
Mibi08g0426 454 SUPERFAMILY beta-beta-alpha zinc fingers 123 369 IPR036236 -
Mibi08g0426 454 MobiDBLite consensus disorder prediction 46 119 - -
Mibi08g0426 454 MobiDBLite consensus disorder prediction 72 107 - -
Mibi08g0426 454 MobiDBLite consensus disorder prediction 227 288 - -
Mibi08g0426 454 MobiDBLite consensus disorder prediction 422 454 - -
Mibi08g0426 454 ProSitePatterns Zinc finger C2H2 type domain signature. 349 369 IPR013087 -
Mibi08g0426 454 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0426 Mibi-ChrMibi08 6720168 6721532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0426 114 173 C2H2 Transcription Factor Family AT4G35280 46.154 2.59e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi08g0426 zf-C2H2_6 1.7e-06 CL0361