Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0425 ATGAATGAAAAGCCGATCTCGGAGCCCCAAGAAAAAGGAGGAAAATCATCCAAGAATGGAGCTAAAGATTCAGCTCTTAAAGATTCAACAGTTCGAGTTTGTGATTTCTGTGGGAAAGAGTTCAATTCTGGGAAAGCCCTAGGAGGTCACAGAAGATATCACATTCAAGCTCTCAAGAAGATGGAGGCTCAGAAGAATCTTCAACCTCCTCCTACTCCTTCAAATCAGTATACCCTAAGAATCAAGCCCAATAATAATGTTAATATTAATATTAACATCCCTCCTCAGGATTTGGTCATCAATAATAACATTATTATTGGGAATGGGAATGGGAATGGGAATGTCAACAATAACTCTCCTTCTCCTTCTTCTTCTTCAAGATCTTTTCGTTGCCGTGTTTGTGACAAGTATTTCCCATCTGAGAAGTCACTGTACGGACACATGAGATCTCATCCTGAGAGAGAATGGAGAGGTATGAACCCTCCTTTCACTCCTTCTTCATCTGAAGAAGAAGAGATGAAAGATGAAGATAATCATAATGGGTTTTGTTCATATTCAGCTGAAGGAGGGTTATTATGTTCTTCATCATCATTATTTGTGGATCTTTCTTTGTCATGTGCTGGAAGTAGTTGGCTTAAGAAAGATAAGAGAGGAAGGAAGAGTATTGGTGCTGCTGAAGGTGCTGAAAACCTTATGTTTTTGTCTCATCTTGGTGATTCCCTTCATAGACGACGCCGTCTTCCTCCTACTACTCCCCCCCAAGAAGTTGTTCAACAATTACCAGTCAAGAAAAGGAAGAAGAATAGTAGTGGTTCTTCTTCTTCTCCCCCAGATTGGAAGGAGAAATTATTAGAAGGTAGTCATGATGATGATGATGATGGGAATGGATCATTGGAAGGTGAAAAGAATGTATGGCAGATGACAGTGATTAGCTTAATGAAGAAAGAGAATGTTATTAAGATGAACAAGAAGAACAACAAGAAGGAGAAAGTTCTGGAGAAGATGATCAAATCAAAAGGAGAAGATCAATTGGTGATAAAAACTTTGAAGCAAGAAGTAGTAGTGAAGTCATCACCAACACCACCACAAAAATATGTATGTGACATATGTGGTAAATCTTTCAATTGTTTTCAAGCTTTAGGGGGACATAAATCCAAGCACAACAAAGAAAATCATAAGAAAGGCAAGGAAGTGGTGGTGGGAAAAAAACCAGAAGAAGAAGTCGAGGTTTGCAACAATAATAGGGATTTATTAATGGGTGGTGAAGAAGAAAAAGGGGCGTCGTCTGTGATTTGTAGTGAAGAGAGATTAGTGATAAGTTCGAATGGTAATGAGGAGATTAACATGAGCAATGAAGAAGAGGAAGTGGGAGAGGCAATTGATCAATCTGATGGTTCTAAAATGATGGATATTGATTTGAATGTGACTTATGTTATGGAGAATGAAGATTAA 1452 0.3836 MNEKPISEPQEKGGKSSKNGAKDSALKDSTVRVCDFCGKEFNSGKALGGHRRYHIQALKKMEAQKNLQPPPTPSNQYTLRIKPNNNVNININIPPQDLVINNNIIIGNGNGNGNVNNNSPSPSSSSRSFRCRVCDKYFPSEKSLYGHMRSHPEREWRGMNPPFTPSSSEEEEMKDEDNHNGFCSYSAEGGLLCSSSSLFVDLSLSCAGSSWLKKDKRGRKSIGAAEGAENLMFLSHLGDSLHRRRRLPPTTPPQEVVQQLPVKKRKKNSSGSSSSPPDWKEKLLEGSHDDDDDGNGSLEGEKNVWQMTVISLMKKENVIKMNKKNNKKEKVLEKMIKSKGEDQLVIKTLKQEVVVKSSPTPPQKYVCDICGKSFNCFQALGGHKSKHNKENHKKGKEVVVGKKPEEEVEVCNNNRDLLMGGEEEKGASSVICSEERLVISSNGNEEINMSNEEEEVGEAIDQSDGSKMMDIDLNVTYVMENED 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0425 483 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Mibi08g0425 483 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 15 67 IPR044653 GO:0003700
Mibi08g0425 483 SMART c2h2final6 129 151 IPR013087 -
Mibi08g0425 483 SMART c2h2final6 32 54 IPR013087 -
Mibi08g0425 483 SMART c2h2final6 365 387 IPR013087 -
Mibi08g0425 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 365 392 IPR013087 -
Mibi08g0425 483 Pfam C2H2-type zinc finger 365 389 - -
Mibi08g0425 483 Pfam C2H2-type zinc finger 129 153 - -
Mibi08g0425 483 Pfam C2H2-type zinc finger 32 54 - -
Mibi08g0425 483 MobiDBLite consensus disorder prediction 1 22 - -
Mibi08g0425 483 ProSitePatterns Zinc finger C2H2 type domain signature. 367 387 IPR013087 -
Mibi08g0425 483 Gene3D Classic Zinc Finger 33 151 - -
Mibi08g0425 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Mibi08g0425 483 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Mibi08g0425 483 MobiDBLite consensus disorder prediction 156 177 - -
Mibi08g0425 483 MobiDBLite consensus disorder prediction 243 301 - -
Mibi08g0425 483 MobiDBLite consensus disorder prediction 281 298 - -
Mibi08g0425 483 SUPERFAMILY beta-beta-alpha zinc fingers 127 387 IPR036236 -
Mibi08g0425 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 54 IPR013087 -
Mibi08g0425 483 MobiDBLite consensus disorder prediction 252 277 - -
Mibi08g0425 483 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0425 Mibi-ChrMibi08 6708106 6709557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0425 120 162 C2H2 Transcription Factor Family AT2G17180 55.814 3.59e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi08g0425 zf-C2H2_6 2e-08 CL0361