Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0424 ATGAATGAAAAGCCGATTTCGGAATCCCAAGAAGAAGAAAAAGAAGGAAAATCGTTCAAGAATGAAGCTAAAGATTCAGTTGCAGCTTCAACAGTTCGAGTTTGTGATTTCTGTGGGAAAGAGTTCAATTCTGGGAAAGCCCTAGGAGGTCACAGAAGGTATCACATTCAAGCTCTCAAGAAGATGGAGGCTCAGAAGAAAAATCAACAACCTCCTTCTCCTTCTCCTTCTCCTTCAAATCAGTACACCCTAAGAATCAAGTATGCGAATGGGAATTTCAATAACAACAACAACAACAATTCTCCTCCTCCTCCTCCTTGTTCTTCTTCTAGATCTTTTCGTTGCATTGTTTGTGAAAAATATTTTCCATCTGAGAAGGCATTGTACGGACACATGAGGTCTCATCCTGAGAGGGACTGGAGAGGTATGAACCCTCCTTTCCCTTCTTCTTCTTCTTCTTCTGAAGAAGAAGATAATGAGATCAAAGATAATCATAATAATGGGCTTTGTTCATCTTCAGATGGTTTAACAGAAGAGGGAGGGTTATTATGTTCATCATCATCTTCAGATGGGTTATTTGCGGATCTTTCTTTGTCATGTGCTGGAAGTAGTTGGCTTAAGAAAGATAAGAGAGGAAGGCAAAGTATTGGTGCTGCTGAAGCTGCTGAAAACCTTGTCTTTATGTGTCATGTTGGTGGATACCTTACACGACTTCGTTTTCCTCCTACTCCTCCTCCTCCCCAAGGAGAAGAAGAGGACCAAGAAGTTGTTCAACTATTACCCGTCAAGAAGAGGAAGAAGAATAGTAGTGGTTCTTCTTCTTCTCCTCCAGATTGGAAGGAGAAATTATTAGAGGGCAGTGATGATGATGATGATGATGGATCGTTGGAAGGTGAGAATCATGAATGGCGGATGACAGTGATGAGCTTAATGACGGAAGAGAAGGTTATTAAGATGAACAAGAAGGAGAAAGTTCTAGAGAAGATGGTCAAATCAAAAGGAGAAGATCAATCGGTGATAAAAACTTTGAAGCAAGAAGTAGTAATGAAGTCATCACCAAAACCACCACCACAAAAATATGTATGTGACATATGTGGTAAATCTTTCAATCTTTTTCAAGCTTTAGGGGGGCACAAATCCAAGCACAACAAAGCAAATCATAAGAAAGGAAAGGAAGTGGTGATGGAACAAGAACCAGAAGAAGAAGTTAAGGCTTGCATCAATGAAGAAGAAGGAGAAGCGTCTCTGATTTGTAGTGAAGAGAGATTAGTGATAAGTCTGAATGGTAATGATAAGATTAACATGAGTAATGAAGGAGAAGAAGAGGAAGTGAGAGAGGCAGGTCATCAATCTGGTGGTTCTAAAATGAAGGATATTGATTTGAATGTAACTTATGTTATGGAGAATGAAGATTAA 1416 0.3948 MNEKPISESQEEEKEGKSFKNEAKDSVAASTVRVCDFCGKEFNSGKALGGHRRYHIQALKKMEAQKKNQQPPSPSPSPSNQYTLRIKYANGNFNNNNNNNSPPPPPCSSSRSFRCIVCEKYFPSEKALYGHMRSHPERDWRGMNPPFPSSSSSSEEEDNEIKDNHNNGLCSSSDGLTEEGGLLCSSSSSDGLFADLSLSCAGSSWLKKDKRGRQSIGAAEAAENLVFMCHVGGYLTRLRFPPTPPPPQGEEEDQEVVQLLPVKKRKKNSSGSSSSPPDWKEKLLEGSDDDDDDGSLEGENHEWRMTVMSLMTEEKVIKMNKKEKVLEKMVKSKGEDQSVIKTLKQEVVMKSSPKPPPQKYVCDICGKSFNLFQALGGHKSKHNKANHKKGKEVVMEQEPEEEVKACINEEEGEASLICSEERLVISLNGNDKINMSNEGEEEEVREAGHQSGGSKMKDIDLNVTYVMENED 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0424 471 MobiDBLite consensus disorder prediction 431 460 - -
Mibi08g0424 471 MobiDBLite consensus disorder prediction 261 302 - -
Mibi08g0424 471 MobiDBLite consensus disorder prediction 1 28 - -
Mibi08g0424 471 MobiDBLite consensus disorder prediction 135 172 - -
Mibi08g0424 471 Gene3D Classic Zinc Finger 337 415 - -
Mibi08g0424 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 360 387 IPR013087 -
Mibi08g0424 471 SUPERFAMILY beta-beta-alpha zinc fingers 111 382 IPR036236 -
Mibi08g0424 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 135 IPR013087 -
Mibi08g0424 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 55 IPR013087 -
Mibi08g0424 471 MobiDBLite consensus disorder prediction 1 22 - -
Mibi08g0424 471 Pfam C2H2-type zinc finger 33 55 - -
Mibi08g0424 471 Pfam C2H2-type zinc finger 360 384 - -
Mibi08g0424 471 Pfam C2H2-type zinc finger 113 137 - -
Mibi08g0424 471 MobiDBLite consensus disorder prediction 435 453 - -
Mibi08g0424 471 SMART c2h2final6 113 135 IPR013087 -
Mibi08g0424 471 SMART c2h2final6 33 55 IPR013087 -
Mibi08g0424 471 SMART c2h2final6 360 382 IPR013087 -
Mibi08g0424 471 MobiDBLite consensus disorder prediction 58 82 - -
Mibi08g0424 471 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 13 466 IPR044653 GO:0003700
Mibi08g0424 471 ProSitePatterns Zinc finger C2H2 type domain signature. 362 382 IPR013087 -
Mibi08g0424 471 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Mibi08g0424 471 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Mibi08g0424 471 Gene3D Classic Zinc Finger 6 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0424 Mibi-ChrMibi08 6689907 6691322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0424 104 146 C2H2 Transcription Factor Family AT2G17180 58.140 1.66e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi08g0424 zf-C2H2_6 7.9e-09 CL0361