Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0421 ATGTCAAGTGGACCGACACATTGGTGTTATGAGTGTGGACATCCGATTGCGCTTGAAGACAGTGAGGTCATCTGCCCGTACTGTCATGAAGGCTTCGTGCAAGAACTTAATGAGAGGCATGAGTTTCAACCATATAACGCTCTTGAACAGTTTCATCGCATGCCTGATTTTTTTGATGCCGTACATGCATTTATGGCGCAGAGAAATTCTGAACCAGGATTTGGGCTTATAGATGCTTTTGACCATTTCATGAGGCAGAGAATAGCCGGGCATTACCCCAATATGGATGTTAGGCAAAGGTCTGATGCCGCACTGTTTCCTGAATGGAGTCATGAGTTTTTCAATTCTGGCCCTCCTTTGGCATTCCATGGTACTGGAGCAGAACCTAGGCCTGTTGATTTCGGTGGTTTATTGATGCCCCCTGGGCTGGAAGCATTTATTCAACAGCTTACCATGAATGATAATCATAGAGGTCCTCCTCCAGCCTCACATTCTTCAATTGATGCAATGCCTACCATTAAGATCACACGATCGCATCTTCGCTCCGATTCACAATGTCCAGTTTGTCAAGAAAAATTTGAGCTAGGTTCTGAGGCTAGGCAAATGCCCTGTAACCATATCTATCACTCGGATTGTATCGTTCCTTGGTTGGTTCGGCATAACTCTTGTCCTGTTTGCCGTGTTGAGCTGCCGTCTCCAGGACAGGGTAGTGCCCGTGTTGGAAGGAATGTGAGTAGTAGCAGTAGCCATGATAGTTCAAGGAGACAGAGAAATCCACGATCAACTTGGTGGCCCTTTTGA 801 0.4619 MSSGPTHWCYECGHPIALEDSEVICPYCHEGFVQELNERHEFQPYNALEQFHRMPDFFDAVHAFMAQRNSEPGFGLIDAFDHFMRQRIAGHYPNMDVRQRSDAALFPEWSHEFFNSGPPLAFHGTGAEPRPVDFGGLLMPPGLEAFIQQLTMNDNHRGPPPASHSSIDAMPTIKITRSHLRSDSQCPVCQEKFELGSEARQMPCNHIYHSDCIVPWLVRHNSCPVCRVELPSPGQGSARVGRNVSSSSSHDSSRRQRNPRSTWWPF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0421 266 MobiDBLite consensus disorder prediction 232 266 - -
Mibi08g0421 266 SMART ring_2 186 226 IPR001841 -
Mibi08g0421 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Mibi08g0421 266 MobiDBLite consensus disorder prediction 238 266 - -
Mibi08g0421 266 CDD RING-H2_RNF126_like 185 227 - -
Mibi08g0421 266 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Mibi08g0421 266 SUPERFAMILY RING/U-box 166 233 - -
Mibi08g0421 266 Pfam Ring finger domain 185 227 IPR001841 -
Mibi08g0421 266 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 86 231 - -
Mibi08g0421 266 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Mibi08g0421 266 FunFam E3 ubiquitin-protein ligase RING1-like 149 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0421 Mibi-ChrMibi08 6633321 6634121 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0421 158 266 C3H Transcription Factor Family AT1G68180 42.202 1.59e-25 99.4