Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0339 ATGGCTTTCTTCAGAAACTTTTCAAATGAAACAGTTTCACATAGTGTCCTAGAAGAAAAAGGCCAAGGACAAAATGCTGACAGGATCCACAAATCACTTGGTAACGAATGTGGTGATGCATCTTCAAGCGAGAAAGAGTTTGATATGAATGTGGATGCCCAGTATCATAGTGATGGTGAACCAGAAGGTAGACTGCAAAATGAGGCAACAGCTGATGGAGTTGGCAACATCCAGTCTACTGGAAGTAAAACTGCTATGGTTGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGCCAGCCTATGAGCCATCAGAATGGGCAGGAATATAATCAAGAATCGCAAAGTGGATCAGACTATAGAAATGCAGAAGGGGCTGAAGATAATTCATCAGATGGAAGAGGGGAAAGATTAGATTCAGAAGATGATGATGGACAGAAAGAAGCAGGAAAAGGTCCACGAGGCCATTCTGATGTCCCTGCTGAGGAGATGTTGTCTGACGAGTATTATGAGCAGGAAGAGCACAGTGATTCATTGCATTACAGGGGAATACATCAACCCACTGGATCAAGTTCATGGCCTCAACAGATGTCTAATGCTGTCAGTAGTCGTGCAAATAGGAATTCTAGAATTTCAGACGATGTTGTAGATGATGATGGTGATGATGATAATGATAATGATGATGGTGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGTGGACTTTGAGCCTGCCACAAGTGGTCGTTCTGCAAATAAGGATAGAGATTGGGAGGGTGAAGAATCAGATAATGATAGTGATGAAAATCTAGATGTTTCAGATGATGATGATACCTACTACGCAAGAAAACCTTTGGGTAGGCAACGTGGCAAAGTGGGACGAACTGTAAAACCTTCTAGAGAACGCAAATCATTCTGTGCATCTGGTCGGCAAAGAAAACCTAAAACATCCTTTGAAGAGGATGAGTCAACAACAGAGGATTCAGAGAGTGAAAGTGATGTTGATTGCAAAAGCATGAGAAGGAGAGGTGCAAATGCGCGCAAGAACTTTAGTCGTTCTTCGGCAGCTGCAGGTTTTTCTGGCCGGAACAGTGAGGTTCGCACATCTAGTAGGACTGTTAGGAAGAAGGTGTCATATGTTGAAAGTGAAGAAAGTGAAGAAGTAGATGAAGGGAAGAAGAAGAAGTCCCAAAAAGATGAATTTGAAGACGAAGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCAAAGGGCATGGCTGATGAGGCGCAGAGGAATAATAGATCAACAGAACCTGTTTTATGGAGTAGTTTGTTTGATTCTGAACCTGACTGGAATGAGATGGAATTCTTAATAAAATGGAAAGGCCAGTCTCATTTGCACTGTCAGTGGAAGTCATTTGCTGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTGAATTATACGAAGAAAGTGACAGAGGACATCAGGTACAGGAACACAATCTCGAGAGAAGAGATTGAGGTTAATGATGTGAGTAAGGAAATGGATTTAGATATTATCAAGCAAAATAGCCAGGTGGAAAGAATCATTGCTGATAGAATCAGCAAAGATAATTCTGACAATGTCATTATAGAATATTTGGTCAAGTGGCAAGGGCTGTCTTATGCTGAAGTGACATGGGAGAAGGACACAGATATTGCTTTTGCCCAGCATTCTATTGATGAGTACAAGGCTCGCGAGGCTGCAATGTCAGTTCAAGGAAAGACGGTAGATCTGCAACGCAAGAAAAGTAAAGCAAGTTTGAGGAAGCTTGATGAACAGCCTGAGTGGTTGAAGGGTGGGAAGCTTCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGACACAAATGTTATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCAATGCTTGGCTTTCTTCAGAATGCCCAGCAAATCCATGGACCTTTTCTTGTAGTTGTCCCTTTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTAATCGAGCTGGGCGAGAGGTTTGTCAACAGTATGAATTTTATAATGATAAAAAGGCTGGCAGGCCTATAAAATTTAATGCCCTCTTGACTACATATGAAGTAGTTTTGAAGGATAAAGCTGTTCTCTCCAAGATTAAATGGAGTTATTTGATGGTTGATGAGGCTCATAGACTGAAAAATAGCGAGGCTCAGCTGTACACTACACTTTCAGAATTTAGCACCAAGAACAAATTGCTTATCACTGGCACTCCACTACAGAACAGCGTTGAAGAGCTATGGGCTTTGCTTCATTTCCTTGATCCTGATAAGTTCAAGAGCAAGGATGATTTTGTTCAGAACTATAAGAATCTGAGTTCGTTCAACGAGAATGAGCTTGCCAATCTTCATATGGAATTGAGGCCTCACATACTCCGAAGAGTCATCAAAGATGTGGAGAAATCATTGCCCCCAAAAATTGAGCGGATACTTAGGGTTGAGATGTCCCCTCTTCAAAAACAGTATTACAAGTGGATTTTGGAACGTAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTTAATATTGTGGTTGAATTAAAGAAGTGTTGCAACCATCCCTTCTTGTTTGAAAGTGCTGACCATGGTTATGGGGGGGACTCAGGAAGTAGTGATAGCAGTAAACTCGAGAGAATTGTCTTCAGCAGTGGGAAGCTTGTCATCCTTGATAAGCTACTTGTTAGATTGCATGAGACTAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGCTGGATATACTGGCTGAGTATATGTCACTTAGAGGATTTCAATTCCAGAGGCTTGATGGCAGTACAAAGGCTGAATTACGCCAGCAGGCAATGGATCATTTTAATGCACCTGGTAGTGATGACTTTTGCTTCCTTCTTTCAACTAGAGCAGGAGGTCTGGGTATTAATCTTGCCACAGCGGACACTGTCATAATATTTGATTCAGATTGGAATCCCCAAAATGATCTCCAGGCCATGAGTAGAGCACATAGAATTGGGCAGCAAGAAGTTGTTAACATATATAGATTTTTGACGAGCAAAAGTGTTGAGGAAGATATTTTGGAACGAGCTAAGAAAAAGATGGTCCTCGACCATTTGGTTATTCAAAAATTAAATGCTGAAGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAGGTCTTTTTGACAAAAATGAACTGTCAGCAATTTTAAGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAGAGTAAGAAACGACTTTTAGGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGAGGGAGAGCAAGCGCATGAATTATTGAGTGCCTTCAAGGTTGCTAATTTCCACAATGATGAAGACGATGGGAGCTTCTGGAGTCGTTGGATAAAGCCGGAGGCGATATCCCAAGCTAAAGAAGCTTTGGCTCCACGTGCTGCAAGGAACATTAAAAGTTATGCTGAAGCTAATCAGTCTGAAAGAAGTAGTAAACGAAAAAAGAAAGAACCTGAGCCTTCTGAGCGAGTTCAGAAGCGCCGGAAAGGAGAGTATTCAGCTCCTGCAACGCCGATGATTGAGGGAGCATCAGCGCAAGTGAGAAGTTGGTCCTATGGGAATGTATCTAAAAGAGACGCACTACGGTTTTCTCGTGCAGTTATGAAATTTGGGAATGAGAGCCAAATCCACTTAATAGCTGCTGAGGTTGGCGGGGCATTTGCAGCTGCTCCGCCTGAAGCTCAGATTGATCTCTTCAATTCTCTAATTGATGGCTGTAAAGAAGCAGCGGAACTAGGAAGTATGGACCCAAAGGGACCTCTTTTGGATTTTTTTGGTGTCCCAGTGAAGGCAAATGATCTGCTTAACCGTGTTCAAGAACTCCAACTACTGGCAAAGCGCATTAGTAGATATGAAGATCCCATTGCACAGTTTCGTGTTTTAACATATCTTAAACCTTCAAATTGGTCTAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATTCATTACCACGGATTTGGTAATTGGGAAAAGATACGATTAGATGAAAGGCTTGGGCTCATGAAGAAGATTGCACCAGTTGAACTTCATCACCATGAAACTTTCTTGCCACGAGCTCCCAATTTGAGAGATCGTGCTAATGCCCTTTTGGAACAAGAACTTGTTGTTCTTGGTAAAAATGCCAATGGTAAAGGGGGACGCAAGGCTTTCAAGAAGGAGAGGGACAATCTTATGAACATTTCGGTAGCACGTGGGCCAGATAAGGGAAAATTAAGTTCTGCTAAAGTCAATATCCAAATGAGAAAGGATAGATCCCTGAGGCCCCGGAAGATTGAGCCGATAGTAAAAGAAGAGGGTGAAATGTCTGACAATGATGAAGTGTATGAGCAGTTCAAGGAAGTAAAATGGATGGAATGGTGTCAAGATGTGATGATTGATGAAATGAAAACCTTGAAACGTCTGCACAGATTGCAGACAACCAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCCAAAATCCGCAATTACTTGCAGCTTCTTGGGCTGAGGATAGATCAAATTGTGTTAGAACATGAAGAGGAACCTTATAAGCAAGATAGGATGACAACGCGATTGTGGAACTATGTCTCTACCTTCTCCCATCTTTCAGGAGAGAGGCTGCATCAGATCTATTCCAAACTTAAACAGGAGCAACACGATGATTCCGGGGTTGGCCCCTCTCACATCAATGGGTCAGTATCTGTTCCATTTGGGAGAAACCACCCCAATTCGTTCCCTCGCCACATGGAGAGACAAAGAGGATTAAAAAATGTGACTTCCAATCAAATGACAGAACCAGTTCACAATACAGGAAAATCCGAGGCTTGGAAACGGAGGAGAAGAGAAGGCGACGGTCATTTTCAAGGTCAGCCCCCGTCTCAGAGAGCTATGGATAATGGAGTCCAAATATCTGATCCTAACTCACTGGGTATTCTTGGGGCTGGACCATCTGATAGACGTTTTGTTAGTGAGAAACCTTTTAGGACACGACCCGGTGGGGCTCCTCCGAGACAGGGTTTCTCGTGA 5244 0.4207 MAFFRNFSNETVSHSVLEEKGQGQNADRIHKSLGNECGDASSSEKEFDMNVDAQYHSDGEPEGRLQNEATADGVGNIQSTGSKTAMVGRWGSTFWKDCQPMSHQNGQEYNQESQSGSDYRNAEGAEDNSSDGRGERLDSEDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQEEHSDSLHYRGIHQPTGSSSWPQQMSNAVSSRANRNSRISDDVVDDDGDDDNDNDDGDADYEEEDEADEDDPDDVDFEPATSGRSANKDRDWEGEESDNDSDENLDVSDDDDTYYARKPLGRQRGKVGRTVKPSRERKSFCASGRQRKPKTSFEEDESTTEDSESESDVDCKSMRRRGANARKNFSRSSAAAGFSGRNSEVRTSSRTVRKKVSYVESEESEEVDEGKKKKSQKDEFEDEDGDSIEKVLWHQPKGMADEAQRNNRSTEPVLWSSLFDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKVTEDIRYRNTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSDNVIIEYLVKWQGLSYAEVTWEKDTDIAFAQHSIDEYKAREAAMSVQGKTVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGNRAGREVCQQYEFYNDKKAGRPIKFNALLTTYEVVLKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFLTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGGLFDKNELSAILRFGAEELFKEERNDEESKKRLLGMDIDEILERAEKVEEKEAEGEQAHELLSAFKVANFHNDEDDGSFWSRWIKPEAISQAKEALAPRAARNIKSYAEANQSERSSKRKKKEPEPSERVQKRRKGEYSAPATPMIEGASAQVRSWSYGNVSKRDALRFSRAVMKFGNESQIHLIAAEVGGAFAAAPPEAQIDLFNSLIDGCKEAAELGSMDPKGPLLDFFGVPVKANDLLNRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRANALLEQELVVLGKNANGKGGRKAFKKERDNLMNISVARGPDKGKLSSAKVNIQMRKDRSLRPRKIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMIDEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGLRIDQIVLEHEEEPYKQDRMTTRLWNYVSTFSHLSGERLHQIYSKLKQEQHDDSGVGPSHINGSVSVPFGRNHPNSFPRHMERQRGLKNVTSNQMTEPVHNTGKSEAWKRRRREGDGHFQGQPPSQRAMDNGVQISDPNSLGILGAGPSDRRFVSEKPFRTRPGGAPPRQGFS 1747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 124 162 - -
Mibi08g0339 1747 SUPERFAMILY Chromo domain-like 410 493 IPR016197 -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 300 327 - -
Mibi08g0339 1747 CDD CD2_tandem 524 580 - -
Mibi08g0339 1747 SMART chromo_7 524 583 IPR000953 -
Mibi08g0339 1747 SMART chromo_7 411 494 IPR000953 -
Mibi08g0339 1747 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 630 802 IPR014001 -
Mibi08g0339 1747 ProSiteProfiles Chromo and chromo shadow domain profile. 526 590 IPR000953 -
Mibi08g0339 1747 Pfam Domain of unknown function (DUF4208) 1527 1619 IPR025260 -
Mibi08g0339 1747 Pfam SNF2-related domain 637 906 IPR000330 GO:0005524|GO:0140658
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 1677 1692 - -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 1213 1237 - -
Mibi08g0339 1747 Gene3D - 609 848 IPR038718 -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 98 414 - -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 374 414 - -
Mibi08g0339 1747 CDD SF2_C_SNF 925 1059 - -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 214 247 - -
Mibi08g0339 1747 Gene3D - 528 580 - -
Mibi08g0339 1747 ProSiteProfiles Chromo and chromo shadow domain profile. 413 492 IPR000953 -
Mibi08g0339 1747 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 185 1653 - -
Mibi08g0339 1747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 1123 IPR027417 -
Mibi08g0339 1747 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 849 1079 - -
Mibi08g0339 1747 FunFam protein CHROMATIN REMODELING 5 isoform X2 528 580 - -
Mibi08g0339 1747 Gene3D - 1345 1453 - -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 1663 1747 - -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 354 373 - -
Mibi08g0339 1747 SMART helicmild6 964 1048 IPR001650 -
Mibi08g0339 1747 Pfam Helicase conserved C-terminal domain 935 1048 IPR001650 -
Mibi08g0339 1747 Gene3D - 849 1079 IPR027417 -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 1208 1243 - -
Mibi08g0339 1747 Pfam Chromo (CHRromatin Organisation MOdifier) domain 527 581 IPR023780 -
Mibi08g0339 1747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 839 IPR027417 -
Mibi08g0339 1747 FunFam Photoperiod-independent early flowering 1 588 862 - -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 98 123 - -
Mibi08g0339 1747 SMART ultradead3 614 813 IPR014001 -
Mibi08g0339 1747 CDD CD1_tandem 411 491 - -
Mibi08g0339 1747 SUPERFAMILY Chromo domain-like 505 581 IPR016197 -
Mibi08g0339 1747 Coils Coil 1078 1098 - -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 15 44 - -
Mibi08g0339 1747 Gene3D - 399 526 - -
Mibi08g0339 1747 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 938 1089 IPR001650 -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 182 208 - -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 1698 1712 - -
Mibi08g0339 1747 MobiDBLite consensus disorder prediction 266 280 - -
Mibi08g0339 1747 FunFam Chromo domain-containing protein 1 401 526 - -
Mibi08g0339 1747 SMART DUF4208_2 1515 1620 IPR025260 -
Mibi08g0339 1747 Coils Coil 1139 1159 - -
Mibi08g0339 1747 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 748 757 IPR002464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0339 Mibi-ChrMibi08 5053787 5070338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0339 640 1075 RAD5 or RAD16-like Gene Family AT1G02670 25.743 5.31e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi08g0339 SNF2_N 1.3e-64 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g0339 08 5053787 5070338 Mibi08g0339 08 5053787 5070338 ECH