Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0335 ATGATCAGTACAATTTTCAGAAGATCTTCTTCCTTACTCTCAAGGCGCGTTTTTTCCGCCTCCACCTTGATCAACTATCAACTTCACCTTACCCCATCAGTCGTAAACTCTGGTGGGTTTGATGGAAATGAGATTCGGCCATTGTTGAACTTGTTTGGTTCTGGTGGGTTCAAGTCAAGCACTTTTCATTCCCTATCTGGGCCGTTGAATTTCAGGGCTTCATTGGTTCATCGTGCTGAATATGCTGTTGATGATTACGCCTTTGAGGAAGGTCCCAAGGGAAACAGTGATGAGGGACTTGATATTGCTAAGCTTGGTATTGCTCAGGATATTGTGTCTTCTTTGGCCAAGAGGGGTATAACGAAGCTCTTCCCTATACAGAAAGCTGTTCTGGAACCTGCCATGCAAGGTCGTGATATGATTGGTCGAGCTAGGACAGGAACTGGGAAGACTCTTGCTTTTGGGATACCTATCATGGACAAGATCATTCAGTTTAATGCTAAAAATGGACGAGGAAGGGATCCCCTTGCTTTGGTTTTGGCTCCAACTAGAGAACTTGCTCGGCAGGTTGAAAAGGAATTCTATGAGTCAGCACCTAACCTGGATACGATTTGTGTATATGGAGGAACACCCATTTCGCGCCAAATGAGGCAGCTTGACTATGGTGTTGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTCTTAACAGAGGTGCTCTGAATTTGAAGGATGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTTGGCTTTCAGGAAGACGTTGAAAGAATCTTGGAGAAGTTACCCCCCAAACGCCAAACTCTTATGTTCTCAGCAACAATGCCATCCTGGATAAGGCAGATTTCTCGCAACTACTTAAATGATCCAGTAACTATTGATCTTGTTGGAGATTCTGATCGGAAGTTGGCAGATGGAATTACATTATACTCTATTGCCTCAGATATCTATGGAAAAGCGGGAATTATTGAGACTCTAGTAACTGAACACGCTAAAGGAGGAAAGTGTATTGTTTTCACCCAAACCAAACGTGATGCTGATCGCCTATCATATTCTATGACAAAAAGCCTTAAATGTGAGGCCTTGCATGGAGACATTTCACAAGCTCAGAGGGAAAGAACTCTTTCTGGCTTCAGAGAAGGCCATTTCAATGTTTTAGTAGCGACTGATGTTGCTTCACGTGGGCTTGACATACCAAATGTTGACCTTGTAATTCATTTTGATCTTCCCAATAACTCAGAGATATTTGTTCATCGATCGGGACGGACAGGTCGAGCTGGGAAGAAAGGAACTGCGATCCTTATTCATACCCAAGATCAAACCAGGGCTGTCAAAATTATTGAGCATGATGTTGGCTGCCGATTTTCTGAGCTACCAAGAATTACTGTTGAAGGTGAATCAGTAGGCATGTTTAATAGCATGGGTGGTGGTGGTGGTCGATTTGGCAATTTTGGAGGCATGCGGGATCGTAGATCTGGTGATTCTGGTTTTGGCCGTGGTTCTGGATTTGGCCGCTCCAGCTTCGGTAATTCTGATGAGAGGGGAAGGTATGGTGGACCTAGTTCTGGTGGTCGTTTCGGCGGCCCTGGATCAAGCCAACCAAGAAGTGGGTCCGGGGGATCATTTGGTAATTCTTCAGGTGAAAGCTCTGGTCGTTATGGTTCTTTTGGTGGCTTTGGCTCTAGACCATCAGACAGTGGCTTTGGCAGATCTAGCGTAGATCGATCAGGCTCTGGAGGATTTGGTTTTAGTCGTCCAAGTGGTGGCAGTGGATTTGGTGGTTCAGATCGTTCTGGTGGTTTTGGCTCGGGTCAAACTAGTGCATTTGGTGACAGAAATTCAAACCAAAGGAATGCTTTTGGTGATTCTCAAGGTAGTGGTGGTTTTGGGAGTGATCAGAACAGTGGGAGAAGGCCCTTCTGA 1959 0.4492 MISTIFRRSSSLLSRRVFSASTLINYQLHLTPSVVNSGGFDGNEIRPLLNLFGSGGFKSSTFHSLSGPLNFRASLVHRAEYAVDDYAFEEGPKGNSDEGLDIAKLGIAQDIVSSLAKRGITKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKNGRGRDPLALVLAPTRELARQVEKEFYESAPNLDTICVYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKDVQFVVLDEADQMLQVGFQEDVERILEKLPPKRQTLMFSATMPSWIRQISRNYLNDPVTIDLVGDSDRKLADGITLYSIASDIYGKAGIIETLVTEHAKGGKCIVFTQTKRDADRLSYSMTKSLKCEALHGDISQAQRERTLSGFREGHFNVLVATDVASRGLDIPNVDLVIHFDLPNNSEIFVHRSGRTGRAGKKGTAILIHTQDQTRAVKIIEHDVGCRFSELPRITVEGESVGMFNSMGGGGGRFGNFGGMRDRRSGDSGFGRGSGFGRSSFGNSDERGRYGGPSSGGRFGGPGSSQPRSGSGGSFGNSSGESSGRYGSFGGFGSRPSDSGFGRSSVDRSGSGGFGFSRPSGGSGFGGSDRSGGFGSGQTSAFGDRNSNQRNAFGDSQGSGGFGSDQNSGRRPF 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0335 652 FunFam ATP-dependent RNA helicase RhlE 93 308 - -
Mibi08g0335 652 Pfam DEAD/DEAH box helicase 124 291 IPR011545 GO:0003676|GO:0005524
Mibi08g0335 652 MobiDBLite consensus disorder prediction 611 652 - -
Mibi08g0335 652 CDD DEADc 111 306 - -
Mibi08g0335 652 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 96 481 - -
Mibi08g0335 652 SMART ultradead3 119 322 IPR014001 -
Mibi08g0335 652 MobiDBLite consensus disorder prediction 538 564 - -
Mibi08g0335 652 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 305 IPR014001 -
Mibi08g0335 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 457 IPR027417 -
Mibi08g0335 652 Gene3D - 101 309 IPR027417 -
Mibi08g0335 652 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 478 IPR001650 -
Mibi08g0335 652 Gene3D - 320 479 IPR027417 -
Mibi08g0335 652 SMART helicmild6 359 439 IPR001650 -
Mibi08g0335 652 CDD SF2_C_DEAD 341 447 - -
Mibi08g0335 652 Pfam Helicase conserved C-terminal domain 334 439 IPR001650 -
Mibi08g0335 652 MobiDBLite consensus disorder prediction 494 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0335 Mibi-ChrMibi08 5003971 5009055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0335 105 471 Eukaryotic Initiation Factors Gene Family AT3G19760 33.065 4.08e-67 224