Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0330 ATGAGGCTTCCTTCTTCAGGACTTGGTCAACCGGCTCAAGAAGGGGAGAAAAAATGTTTGAATTCTGAACTATGGCATGCATGTGCTGGTCCTCTGGTGTCTCTGCCACCTGTTGGAAGTCGTGTGGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACAAACAAGGAAGTAGATGCACATATTCCCAATTACCCTAACTTGCCACCGCAGCTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATGTGGAAACAGATGAAGTATATGCTCAAATGACCCTGCAACCCTTAAGTCCGCAAGAGCAAAAGGATATATATCTAATGCCTGCAGAGTTGGGTACTGCAAGCAAACAACCAACCAACTACTTCTGCAAAACGCTAACAGCAAGTGATACCAGCACTCATGGGGGATTTTCTGTCCCTCGCAGAGCGGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCGCAGCAGCCTCCTGCACAGGAACTAATTGCGAGGGATCTTCATGATAATGAATGGAAATTCAGACACATTTTTCGAGGTCAGCCGAAGAGGCATCTTCTGACTACAGGGTGGAGTGTTTTTGTTAGTGCTAAGCGGCTGGTTGCTGGTGATTCAGTCCTTTTTATCTGGGATGACAAAAATCAATTACTCTTGGGGATCCGGCGAGCAAATCGTCCACAGACTGTCATGCCGTCTTCAGTTTTGTCAAGTGACAGCATGCATATAGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGCTTTACTATATTCTATAACCCAAGGGCAAGCCCATCGGAATTTGTCATTCCCCTAGCCAAGTATGTCAAAGCTGTATATCATACCCGAGTTTCTGTTGGCATGCGATTTAGGATGTTATTCGAGACAGAAGAATCAAGTGTCCGTAGGTACATGGGTACTATAACAGGCATTAGTGATTTAGATCCTGTTCGCTGGCCAAATTCACACTGGCGTTCAGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGACAGGCAGCCTAGAGTTTCCTTGTGGGAGATTGAACCATTGACAACATTCCCTATGTATCCATCCCCATTCCCTTTGAGGCTAAAACGCCCTTGGCCCTCTGGACTACCTTCTTTTGGTCTAAAGGATAGTGACATGAGCATTAGTTCTCCATTCACGTGGCTCCAAGTTGGGCTTGGAGATCAAGGAATGCAATCCCTGAACTTCCAGGGACTGGGGGTTGCACCATGGATGCAACCAAGACTTGATGCTTCTATGTCAGGACTTCAGCCAGAAATATATCAAGCAATGGCTGCTGCTGCACTTCAGGAAATGAGGGGAATGGGTCCATCTAAGCCTTCTTCTGAATCTCTGCTGCAGTTTCAGCAGTCTTCAAATGTTTCTGCTGCTCCTTCTGGTATCCAGAGACAAGTGTTACAGCAGTCTCAGTCCCAAAATGTCCTACACAATTTTCAAGAAAACCAGATTCCTTCTCACTCTTCACTTCTGCAACGACAGATGCAGCGTTACCATCCTTATAATGATCAGAGGCAGCAGCAGCAGCAACCTAACAGTTTACCTGTTCAGCAGCATATCTCAAATGTTGTCTCTCCTTTGTCTAATTTTGCATCACCTACCCAGTTTCTCTCTCCATCCATGCCGACCATTGTTTCAAATTGCCAACAGCAGAGTTTTCCTGAATCCGCCAGGAACCAAATTCCCAGCTCTGATGTTTCTGCTATCCAGAGTCTACTAGGATCATTTCCCCAGGATGGAGTATCCCAGTTACTTAACATGAATGGACGCAACTCTCTGGTTTCTCCTGCTTCCTTACTACCCAAGCAAATAGCTGTTGAACCTCAGCTTCAAACTGCTGCTACTCAGTGTGTACTACCAGAGGTGGAAAACTTGGGAACAACACACTCAAATGTATCTGAACGTCCCATTTTGCCTCCATTTCCTGGAAGAGAATATTCTGCATATCAAGCTTCAAACTTCGCTGGTGCTACAGGGACTGATTATCCTCCAAGTTCAGACATGACAACATCACGTTGTGTAGATGAATCTGGCTTTCTACAGTCTTCTGAAAATGTGGAGCAAGCAAATACTTCAACTGGAACCTTTGTCAAGGTTCACAAGTCAGGGTGCTTTGGGAGGTCACTGGACATCTCTAAATTTAGCAGCTATGATGAACTTCGTAGTGAGCTTGCCCGCATGTTTGGGCTTGAAGGCCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCGTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATTCTGTCTCCAGTTGAAGTACAACAAATGGGCAGAGATAGTCTTGGTCCCACAGCTTTTGCATTGGGCCACAAGCTTTCTACCACTAGCAATGCTTGTGAGTTGTGA 2478 0.4617 MRLPSSGLGQPAQEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDIYLMPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWDDKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFGLKDSDMSISSPFTWLQVGLGDQGMQSLNFQGLGVAPWMQPRLDASMSGLQPEIYQAMAAAALQEMRGMGPSKPSSESLLQFQQSSNVSAAPSGIQRQVLQQSQSQNVLHNFQENQIPSHSSLLQRQMQRYHPYNDQRQQQQQPNSLPVQQHISNVVSPLSNFASPTQFLSPSMPTIVSNCQQQSFPESARNQIPSSDVSAIQSLLGSFPQDGVSQLLNMNGRNSLVSPASLLPKQIAVEPQLQTAATQCVLPEVENLGTTHSNVSERPILPPFPGREYSAYQASNFAGATGTDYPPSSDMTTSRCVDESGFLQSSENVEQANTSTGTFVKVHKSGCFGRSLDISKFSSYDELRSELARMFGLEGQLENPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPVEVQQMGRDSLGPTAFALGHKLSTTSNACEL 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0330 825 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Mibi08g0330 825 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 801 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mibi08g0330 825 FunFam Auxin response factor 707 801 - -
Mibi08g0330 825 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Mibi08g0330 825 Gene3D - 292 364 - -
Mibi08g0330 825 SUPERFAMILY CAD & PB1 domains 703 786 - -
Mibi08g0330 825 CDD B3_DNA 127 228 IPR003340 GO:0003677
Mibi08g0330 825 Gene3D - 126 229 IPR015300 -
Mibi08g0330 825 Pfam AUX/IAA family 702 797 IPR033389 -
Mibi08g0330 825 FunFam Auxin response factor 126 230 - -
Mibi08g0330 825 SUPERFAMILY DNA-binding pseudobarrel domain 114 257 IPR015300 -
Mibi08g0330 825 FunFam Auxin response factor 292 364 - -
Mibi08g0330 825 Gene3D - 708 801 - -
Mibi08g0330 825 ProSiteProfiles PB1 domain profile. 712 796 IPR000270 GO:0005515
Mibi08g0330 825 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mibi08g0330 825 SMART B3_2 128 230 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0330 Mibi-ChrMibi08 4946710 4955877 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0330 713 823 B3 DNA Binding Superfamily AT1G19220 58.559 6.57e-33 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mibi08g0330 AUX_IAA 2.9e-08 CL0072