Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0314 ATGGGACCAGATCAAGAACTTGTAGAGCTCCTATGGCAAAATGGACAGGTAGTTTTGAACAGCCAAACAAATAGGAAACCAGTTTTTAATTCAGTAAACTCGAGGCAAGTTCAGAATAATGATCAATCAACATTGAGGACCAGTGGATTATACGAGAATTCAAGTAATTTTTTTCAAGAAGATGAGACAGTCTCATGGATACAATACCCACTGGAGGATCCATTGGAACAAGAACTATGTTCAGACTTTTTACATGAGCTTCCATCCTATGATATTGAACCTGATAAGCCAGATAAGCAATCTGAAGAAGAGAAGTTTGCCAAATTCACTACCGACAGCGCCTCCCATCTGACTGCAACTTCACAGCCACCTAATATAAAACTTCCCTCTGTTCAGAAATCCTCAGGAAATCCTATCCTTTCTCCTAGTTTTACTCCTGTTGCTTCTCAGAAAAACGTTGACTTTAATGGATTACCAAAAGTCGTCAACTTCCCTCAGTTTTCAGCAGTTCCTAAGGTTCTTTTAGCACCTTCTAATGCACAACATGGGGAAAAAGGTGCAGGTAACATGTTGCAAAATGAGGCTGGAGAGGGCTCAGTGATGACAGTTGGTTCAAGTCATTGTGGCAGCAATCAAATTCCTCGAGACCGAGATGCGAGCAATGGTGTTTGGACTACTAGTTTGTCAGCAGAGCCTTCTTCCTTTAGGGATAATGTTCAGAGAAAGCTTCCAACAGATGAGAAAGGGAAATCAGAAACACATGAACCAACTACCACTTCATCTTCTGATGTCTCAGGCAGTAGTCTTGAAAAAACTTGTTCCTGCACTCCTAGTATCTGTAGCCAGAAAAGAAAAGGGAAAGATTCAGAAGAGTTAGAGAAACAAAGTGAGACCATAGAACTCAAGTCAGTAGCTAAGAATAAGGCAGCTCAGAGGACAGGGTCTTCCCGAAGAAACCGTGCTGCTGAAGTGCATAATCTCTCGGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGAAGGCGTTGCAACAACTCATACCTCACAGTAACAAGACAGACAAAGCATCAATGCTAGATGAGGCAATAGAATATTTGAAATCACTTCAGTTTCAGCTTCAGATGATGTTGATGGGAGCTGGCATGGCACCAGTGATGATTCCAGGAATTCAGCACTACATGTCTCAAATGGGTATGGGATTAGCGACACCTTCTTTGTCTAATCATATGAATATACCAAGAGTGCCACTCGATCAATCCATATCTATATCTCAAGCACCAAATCAGAATGTAACATTCCAAGCTCCTGTTCTGAGTCCCTTTAATTACCCAAATCATATGCAAAATCCAGCTCTTTCTGAGCAATATGCACGCTGCATGGGCTATCATCTTATGCAAAGTGCCTCTCAGTCAATGAATGCATTCAGTTACGGTTCCCAAGCAGTACATGGTCAACCAATGATTCCACCCAGCAATAGCAATGGACCCCCGAGTGGGGCAGCTAATACCAATGATGCTGTCTGTGGCAGGATGGGTAAGCCGCATTAA 1548 0.4238 MGPDQELVELLWQNGQVVLNSQTNRKPVFNSVNSRQVQNNDQSTLRTSGLYENSSNFFQEDETVSWIQYPLEDPLEQELCSDFLHELPSYDIEPDKPDKQSEEEKFAKFTTDSASHLTATSQPPNIKLPSVQKSSGNPILSPSFTPVASQKNVDFNGLPKVVNFPQFSAVPKVLLAPSNAQHGEKGAGNMLQNEAGEGSVMTVGSSHCGSNQIPRDRDASNGVWTTSLSAEPSSFRDNVQRKLPTDEKGKSETHEPTTTSSSDVSGSSLEKTCSCTPSICSQKRKGKDSEELEKQSETIELKSVAKNKAAQRTGSSRRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSNKTDKASMLDEAIEYLKSLQFQLQMMLMGAGMAPVMIPGIQHYMSQMGMGLATPSLSNHMNIPRVPLDQSISISQAPNQNVTFQAPVLSPFNYPNHMQNPALSEQYARCMGYHLMQSASQSMNAFSYGSQAVHGQPMIPPSNSNGPPSGAANTNDAVCGRMGKPH 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0314 515 FunFam Basic helix-loop-helix transcription factor 315 378 - -
Mibi08g0314 515 MobiDBLite consensus disorder prediction 481 501 - -
Mibi08g0314 515 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 317 383 IPR036638 GO:0046983
Mibi08g0314 515 MobiDBLite consensus disorder prediction 200 327 - -
Mibi08g0314 515 CDD bHLH_AtPIF_like 320 383 - -
Mibi08g0314 515 SMART finulus 326 375 IPR011598 GO:0046983
Mibi08g0314 515 MobiDBLite consensus disorder prediction 240 254 - -
Mibi08g0314 515 Gene3D - 315 377 IPR036638 GO:0046983
Mibi08g0314 515 MobiDBLite consensus disorder prediction 111 134 - -
Mibi08g0314 515 MobiDBLite consensus disorder prediction 200 239 - -
Mibi08g0314 515 Coils Coil 326 346 - -
Mibi08g0314 515 MobiDBLite consensus disorder prediction 283 301 - -
Mibi08g0314 515 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 369 IPR011598 GO:0046983
Mibi08g0314 515 MobiDBLite consensus disorder prediction 255 282 - -
Mibi08g0314 515 MobiDBLite consensus disorder prediction 481 515 - -
Mibi08g0314 515 Pfam Helix-loop-helix DNA-binding domain 324 370 IPR011598 GO:0046983
Mibi08g0314 515 PANTHER TRANSCRIPTION FACTOR PIF3 2 478 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0314 Mibi-ChrMibi08 4746139 4748608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0314 1 470 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.146 1.90e-46 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi08g0314 HLH 6.5e-15 No_clan