Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0302 ATGGCAAGACTACCAAGGCAACAAAAGAACAGGACACTAATCAACGATTCCAAATCCAAACATGTCACATTCTCAAAACGCAGACACTCAATTTTCCAGAAAGCAAACGAGCTTTGTACCTTGTCCGCGGCGGATATGGCCCTCATCGTCTTCTCTCCCGGAGGCAAACCCTACTCCTTTGGCCATCCTTCCACTGAAGCTGTCCTCAACAGACTCATCACTGGTTCTTCTTCTTCCTCTCCTTCAGAAAGGGCCCAAAGAGAAGCTACCATGGAGGAACTGAACAAACAGTTAAACGATCTGAATGCAGAGTTGAAGGAAGAGAGGAAGACAGGGAAGGAACTGAAGAAGAAGATGAAGAATCTTCCTGATGTTGAAAAGATGAACAGAGATGAGTTGATGAACATGAAGGAATCGCTTGAGGATTTGAGGGTGCAACTGCAGAAACGTAAAGAGGAGATGTTAGCTGCCAAGATGAATGGTGGGAATGATAATGATGATGATGATCGCCTGAGATTAACTTTGGGGGGTGTTTATTCTGCTGCAGAAGATTTTTCTGCAAATGATGCCACCATTGATGATTAA 585 0.4427 MARLPRQQKNRTLINDSKSKHVTFSKRRHSIFQKANELCTLSAADMALIVFSPGGKPYSFGHPSTEAVLNRLITGSSSSSPSERAQREATMEELNKQLNDLNAELKEERKTGKELKKKMKNLPDVEKMNRDELMNMKESLEDLRVQLQKRKEEMLAAKMNGGNDNDDDDRLRLTLGGVYSAAEDFSANDATIDD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0302 194 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 60 IPR002100 GO:0003677|GO:0046983
Mibi08g0302 194 Gene3D - 16 89 IPR036879 GO:0003677|GO:0046983
Mibi08g0302 194 SMART madsneu2 1 63 IPR002100 GO:0003677|GO:0046983
Mibi08g0302 194 FunFam Agamous-like MADS-box protein AGL62 16 82 - -
Mibi08g0302 194 Coils Coil 130 160 - -
Mibi08g0302 194 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Mibi08g0302 194 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Mibi08g0302 194 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Mibi08g0302 194 PANTHER MADS BOX PROTEIN 11 149 - -
Mibi08g0302 194 SUPERFAMILY SRF-like 6 76 IPR036879 GO:0003677|GO:0046983
Mibi08g0302 194 ProSiteProfiles MADS-box domain profile. 4 64 IPR002100 GO:0003677|GO:0046983
Mibi08g0302 194 Coils Coil 84 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0302 Mibi-ChrMibi08 4590085 4590669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0302 6 144 Type I MADS-box Gene Family AT2G24840 41.722 1.17e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi08g0302 SRF-TF 3.1e-19 No_clan