Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0260 ATGAAAAATTCTCTCAACTTTTCGACTCAATCGCCTACCTCCTTCTCTTTTCTTCTCTTCTCTTCTTCAGAAAGTGATTCGATGGAGTCAGAGGACAATCATTCTGTGGATTCTAAGTCAGCCTGTGGGTCAGCAGGTCCTTCTGGGATCCCTCCAATTAATGTTGCTAAAAAAGTGGAAAGTAGTGCTTGGGGGATACCGCATGGGGCTGGTGCACATCATGCATCTAGTGATGCTAGCTTGTTTTCTAGTTCTCTGCCCGTTCTTCCACATGAAAAGTTGAATTTCCCTGATTCAGTGCGTTATGGACAACCTTTTGATGATAATATGCCAATGCTTAATGAAGACCACAAAGAAGTTGACGGGTATGATCCACTTGAAGATGTTGAAACCAATGCTATTGGAAACATACTTCCTGATGATGAAGAAGAGCTATTAGCTGGGATAACGGATGATTTTGACCTGAGTAGGTTGCCCAGCCAACTGGAGGATCTGGACGAAAACGATTTGTTTGGTAGTGGAGGAGGGTTGGAAATGGATTTTGAGCCCCAAGAGAGTCTTAAGATTGGCATGTCAAAGATGAGCATTACTGATGGAGTTGCTTCAAATGGCATTGGCCATTATGTACTTCCCAATGGTGCGGGACCTGTGGCTGGGGAGCATCCCTATGGGGAACATCCATCAAGAACATTATTTGTGAGAAACATTAATAGTAATGTTGAGGATTCTGAATTAAGATCACTATTTGAGCAATATGGGGATATTAGAACTTTGTACACTGCATGCAAGCATAGAGGCTTTGTGATGATATCTTACTACGACATTCGAGATGCTCGTACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCTAAGGACAACCCCTCTGAAAAGGACATCAACCAAGGAACTCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGATGATCTTCGTCTGATATTTGGGGCTTATGGGGAGGTTAAAGAGATAAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTACGATGTTAGAGCAGCTGAGGCAGCACTTAAGGCATTAAATCGATGTGATATTGCAGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGGGCACGAAGAAATTTGATGCAACAACTGAGTCAAGAGCTGGACCTAGATGAAGCACGGACTTTCAGACATCAAGTAGGTTCACCAATGGCCAATTCTCCCCCTGGTAATTGGGCACAATTTGGAAGTCCAGTTGAACATAGCTATTTGAGTTCTTTTAGCAAGTCTCCAGTAAGTAGCAATCATTCATCTGGATTGGCCGCGGTTCTCTCACCTAATGCATCAAACTCTACTAAGATTGCTCCAATTGGCAAGGACTCAGGAAGAGTTAATAGTTCAAATCAAATATTTACAAATGCAGTATCAACACAAGGAGTTGCTTTTCAGAATTCACTGTCCTTTCCCGAGCTAAATGCGAATGCAAGTTCCAGGCCCATTGCTACTTTCAGTGAATCAAGCTCAACTCCATCAAGCATTGGAACACTATCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTACTTCTTACACAGAGCATTCGAACACTTCTGCTTGGTCGTCCTCTTCTCCTGGGCTCCCTTTTACATCTAGTGGCGAGAAGCAGGGTTATCCATATACTAATCGGCCCAGTTCCTTTCTTGGTACGCGCTCCCATCATCATGTTGGATCTGCTCCTTCTGGACTTCCTCTTGATAGGCACTTCAACTATTACCCAGAGTCACCAGAAACTTCTTTCATGAGTCCAGTTTCATATGGGAATATAAATCACAGTGATGGGAACTTTATGAACATGGGTGCTCGTGCGGCTACTGGGGTTATTGGTCTTTCAGGAAATACCTCGGAAATAAATTCACCTAGTTTCAGGTTGATGTCACTGCCCAGGCATAGTTCCTTGTTTCTTGGAAACGGTTCTTATTCTGGAGTGGTTGCAAATAGTGAAGCGTTTGCCGATCGTAGTCGAAGTCGGCGACCTGAAAATAGTGTGACCCAAATTGATAGCAAGAAGCAGTATCAACTTGATCTAGACAAAATTATCAGTGGGGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAATAAGTACACTTCAAAGATGTTGCTGTCTGCAATTGATGAGAACCACCGGGGCACTTATGACTTTCTCTACTTGCCCATTGACTTTAAGAACAAGTGTAATGTGGGTTACGCCTTCATCAATATGGTGTCTGCTTCACATATTGTTCCCTTCTATAAGGAATTTAATGGGAAGAAATGGGAAAAATTTAATAGTGAAAAAGTTGCATCACTGGCTTATGCACGGATCCAGGGAAAGGCAGCACTTGTGACACACTTTCAAAATTCAAGCTTGATGAATGAGGACAAGCGATGCAGGCCTATTCTCTTTCATTCAGAGGGCCAAGAGATTGTTGACCAGGAACCTTTTTTATCCAGCAATTTGAATATATGCATCCGTCAACCAGATGGGTCATACTCAGCTGATTTGTTGGAAAGCCCGAAGGGCGATTTGGAGGACAAGCTGTAG 2631 0.4257 MKNSLNFSTQSPTSFSFLLFSSSESDSMESEDNHSVDSKSACGSAGPSGIPPINVAKKVESSAWGIPHGAGAHHASSDASLFSSSLPVLPHEKLNFPDSVRYGQPFDDNMPMLNEDHKEVDGYDPLEDVETNAIGNILPDDEEELLAGITDDFDLSRLPSQLEDLDENDLFGSGGGLEMDFEPQESLKIGMSKMSITDGVASNGIGHYVLPNGAGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRCDIAGKRIKLEPSRPGGARRNLMQQLSQELDLDEARTFRHQVGSPMANSPPGNWAQFGSPVEHSYLSSFSKSPVSSNHSSGLAAVLSPNASNSTKIAPIGKDSGRVNSSNQIFTNAVSTQGVAFQNSLSFPELNANASSRPIATFSESSSTPSSIGTLSGPQFLWGSPTTSYTEHSNTSAWSSSSPGLPFTSSGEKQGYPYTNRPSSFLGTRSHHHVGSAPSGLPLDRHFNYYPESPETSFMSPVSYGNINHSDGNFMNMGARAATGVIGLSGNTSEINSPSFRLMSLPRHSSLFLGNGSYSGVVANSEAFADRSRSRRPENSVTQIDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSASHIVPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQEIVDQEPFLSSNLNICIRQPDGSYSADLLESPKGDLEDKL 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0260 876 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 302 IPR000504 GO:0003723
Mibi08g0260 876 CDD RRM2_MEI2_like 313 383 - -
Mibi08g0260 876 FunFam Protein MEI2-like 1 313 408 - -
Mibi08g0260 876 FunFam MEI2-like protein 5 isoform 2 218 312 - -
Mibi08g0260 876 SUPERFAMILY RNA-binding domain, RBD 226 389 IPR035979 GO:0003676
Mibi08g0260 876 Gene3D - 218 312 IPR012677 -
Mibi08g0260 876 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 381 IPR000504 GO:0003723
Mibi08g0260 876 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 295 IPR000504 GO:0003723
Mibi08g0260 876 Pfam RNA recognition motif 2 719 815 IPR007201 -
Mibi08g0260 876 MobiDBLite consensus disorder prediction 547 594 - -
Mibi08g0260 876 CDD RRM1_MEI2_like 228 304 IPR034453 -
Mibi08g0260 876 SMART rrm1_1 315 383 IPR000504 GO:0003723
Mibi08g0260 876 SMART rrm1_1 230 298 IPR000504 GO:0003723
Mibi08g0260 876 SMART rrm1_1 721 797 IPR000504 GO:0003723
Mibi08g0260 876 SUPERFAMILY RNA-binding domain, RBD 721 806 IPR035979 GO:0003676
Mibi08g0260 876 MobiDBLite consensus disorder prediction 26 54 - -
Mibi08g0260 876 MobiDBLite consensus disorder prediction 547 585 - -
Mibi08g0260 876 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 387 IPR000504 GO:0003723
Mibi08g0260 876 Gene3D - 313 409 IPR012677 -
Mibi08g0260 876 CDD RRM3_MEI2_like 722 807 IPR034454 -
Mibi08g0260 876 PANTHER RNA RECOGNITION MOTIF-CONTAINING 32 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0260 Mibi-ChrMibi08 3860726 3868484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0260 226 380 Eukaryotic Initiation Factors Gene Family AT1G71770 26.829 2.74e-11 65.5