Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0205 ATGTTGAATCGAAGTGGTGGAAGGGATCGGTTTAGAAGGGATTACCCTTCAAGATTTGAAGATAAAGGAAACAGTGGGCGTAGCAATAGCAGTAACCCACCTTCAAGGCACCTTTGGGTTGGGAATTTAGCACATAGTTTAACAGAGAATGAACTTGCTCGTCATTTTCTGCAGTTTGGACCACTTGAAAGTGTAGCATTCCAGCCTGGTCGTAGCTATGCTTTCATCAATTTCAGAATGGATGAAGATGCTATTGATGCTTTGAAAGAACTTCAAGGTTTTCCTGTTGCTGGCAACCCTCTTAGAGTTGAGTTTGCCAAGGCGGATAAGCCACCATCACTAACTCGTGATGAGGATTACTCTTGGGATGAACGAAACTCAGGGAGAAGGGGATCTCCTTTCACTCAAAGAGAGTTTAGAGGACGTCATGGTAGTCCTGAGCCTCCTTATCCCAACCAATCCAAGCTGACTGATAAAAGCCCAGAACCCAGTGAGGTTTTGTGGATAGGATTTCCATCTCAATTGAATGTGGATGATTTAGCGTTGAGAAAGGCTTTTGCTCCATTTGGTGAGATTGAGAAAATTACAACATTTCCAGGTCGTAGTTATGCTTTTGTTCGTTTTAGGAGTATAACGTCAGCACGTAGAGCAAGAGATGCTCTGCAGGGAAAGTTATTTGGAAATCCTCGTGTACATATTTGTTTTGCAAAAAGTGAAGCTGGTTCATCAGGCAGTGGGAGGTTTTCAATTATTACCCCTTCGTCCCCATCTTACAGATCAAGTGGCCGTCATGGATCGATTGAGAACTTGAGACAAGATAGGAGTATTGCAGGCTTTAGTGGAGACCGTAGTGCTAGTTCCCCTAACATATTCCCAAAATGGGACTTGGCAGATTCTGATACTTATGATTTAGATAGAAGGGGTTCTTCACGGGGCAGTGGTTTCAGTTCATATGAACAGAGGAGAGTTGGTGAAAAGGTGACTCCACTCGGAGCACTACAAGACAGTTTTGAATACTCAGTAAGTCCTAGAGATAGACAAGCGCACCTAGGTACTTTTCCCCAGAGATACCCTGAGAAGCATGCAATATATGAAGATCCACGGGACTTTCCAGATGAAGTGTATTATCAACATGACACTAAAAGACTGAAGACTGGATATTTTCCTCCTGAAAAGGAGCTTCCAGAGTATCCTCTTTCTGATTTAGAAAGGCAGAGACATACTCTCCCGAGGTTATTAACTGATTTACCCCGACATGAGGTCCTTGATAAAAGAATTGATGCTGGACCTGTTGTGCATAGACAAACTTTTGATCCTAAACCAAACTCCCCTTTTGCTCGGTCAGATCGTGGTGAGCGCTGGAAGCCTAGTAGTGATAGCTTCCATGCCGATCCCAGTGCTATGCAATCGTATTCTATTGAGAAGAGAAGACTCACACCTGAACCTGGTAACTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATTGCCAAAGGTGGAACACCTGTTTGTCGTGCTCGCTGCTTCCCTGTGGGAAAAACCCTTGATATCATGTTACCTGAGTTCTTGGATTGCACAGCGAGGACTGGTTTAGACATGCTTTCAAAGCATTATTACCAAGCGGCTGGTGCTTGGGTTGTTTTCTTTGTGCCTGAAAGCGATGTTGACATTGAATATTACAATGAATTCATGCATTACCTGGAGGAAAAGCGCAGGGCCGCAGTTGCTAAGTTGGATGACAGGAATACCTTGTTTCTTGTACCTCCATCAGATTTCTCACAGAAAGTATTGAAGGTACCTGGAAAGTTGAGCATATCTGGTGTGGTTCTAAGGCTGGAGCATCCTGGTTCAACTCAAGGGTTCATGCACAATCAAAATGAGGCAAAAGATGGAAACTTATATCATGGGGATGCATTGTATCCAAAGCCACCGTTCGCATCCATTCCTGAATTGGGTTCATCTGGAATGAGTGATCTTTCTTTCCTTAGAAATAAGATTTCAACAGCCGTGTCTGGTTCGGCAAGGGGACACGAACACGATTATCATCCAGTTCAACAACAGAACCATACATCTGGGCCTAATGGGTCTGATAACAATCTCCAGACCTTGATATCCAATAGAAATTTACCATTACAACTATCAAATGGTTCTGTTCAACCTCTTACCCAGGATCATCAGCTGAGCATTCTGAGGTCAGCATTAGATGCCAATTCAAATCAACGTATTGGTGATTCTTTATCTCTGCCTGGAGGATCCCTGCAACAAGAGCAGCTTGCACAACTAGCGGCATCTCTTCTTGAGCAGCAGAGGCAATCAGGAAGCACTCTGAGTGCATCCACATCTGATGATCCAAGGCAAACTCATAGAGTTAACAACTCGATGAACCCTGAAGTTGCAACATCTCAGTATGGACAGGTTCTACAACTTCAAAAGCAACAGCAGATGTCAAATGCGCCGCCTCAAGGATCACCTATGGCTCAAAGAGAGCCACAGAGAGGGGCCAACGGAAACCAGCAACCATCTACTGGTAGTAGTAACTTGCAGCAAGATGCTGAAGCAGATCCACAGAAGAGGCTACAAGCGACATTGCAATTGGCGGCAGTTCTTCTTCAGCAAATTCAGCAAGGGAAAGGAAGTTGA 2640 0.442 MLNRSGGRDRFRRDYPSRFEDKGNSGRSNSSNPPSRHLWVGNLAHSLTENELARHFLQFGPLESVAFQPGRSYAFINFRMDEDAIDALKELQGFPVAGNPLRVEFAKADKPPSLTRDEDYSWDERNSGRRGSPFTQREFRGRHGSPEPPYPNQSKLTDKSPEPSEVLWIGFPSQLNVDDLALRKAFAPFGEIEKITTFPGRSYAFVRFRSITSARRARDALQGKLFGNPRVHICFAKSEAGSSGSGRFSIITPSSPSYRSSGRHGSIENLRQDRSIAGFSGDRSASSPNIFPKWDLADSDTYDLDRRGSSRGSGFSSYEQRRVGEKVTPLGALQDSFEYSVSPRDRQAHLGTFPQRYPEKHAIYEDPRDFPDEVYYQHDTKRLKTGYFPPEKELPEYPLSDLERQRHTLPRLLTDLPRHEVLDKRIDAGPVVHRQTFDPKPNSPFARSDRGERWKPSSDSFHADPSAMQSYSIEKRRLTPEPGNSSLTEWKWEGTIAKGGTPVCRARCFPVGKTLDIMLPEFLDCTARTGLDMLSKHYYQAAGAWVVFFVPESDVDIEYYNEFMHYLEEKRRAAVAKLDDRNTLFLVPPSDFSQKVLKVPGKLSISGVVLRLEHPGSTQGFMHNQNEAKDGNLYHGDALYPKPPFASIPELGSSGMSDLSFLRNKISTAVSGSARGHEHDYHPVQQQNHTSGPNGSDNNLQTLISNRNLPLQLSNGSVQPLTQDHQLSILRSALDANSNQRIGDSLSLPGGSLQQEQLAQLAASLLEQQRQSGSTLSASTSDDPRQTHRVNNSMNPEVATSQYGQVLQLQKQQQMSNAPPQGSPMAQREPQRGANGNQQPSTGSSNLQQDAEADPQKRLQATLQLAAVLLQQIQQGKGS 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0205 879 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 230 IPR000504 GO:0003723
Mibi08g0205 879 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 101 IPR000504 GO:0003723
Mibi08g0205 879 MobiDBLite consensus disorder prediction 433 466 - -
Mibi08g0205 879 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 108 IPR000504 GO:0003723
Mibi08g0205 879 MobiDBLite consensus disorder prediction 109 126 - -
Mibi08g0205 879 MobiDBLite consensus disorder prediction 808 855 - -
Mibi08g0205 879 SUPERFAMILY RNA-binding domain, RBD 23 112 IPR035979 GO:0003676
Mibi08g0205 879 MobiDBLite consensus disorder prediction 22 36 - -
Mibi08g0205 879 FunFam RNA recognition motif (RRM)-containing protein 151 244 - -
Mibi08g0205 879 MobiDBLite consensus disorder prediction 107 161 - -
Mibi08g0205 879 MobiDBLite consensus disorder prediction 685 702 - -
Mibi08g0205 879 Gene3D - 18 113 IPR012677 -
Mibi08g0205 879 CDD RRM3_Spen 38 107 - -
Mibi08g0205 879 PANTHER RNA RECOGNITION MOTIF-CONTAINING 30 873 - -
Mibi08g0205 879 MobiDBLite consensus disorder prediction 303 322 - -
Mibi08g0205 879 MobiDBLite consensus disorder prediction 808 858 - -
Mibi08g0205 879 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 238 IPR000504 GO:0003723
Mibi08g0205 879 SMART rrm1_1 37 104 IPR000504 GO:0003723
Mibi08g0205 879 SMART rrm1_1 166 234 IPR000504 GO:0003723
Mibi08g0205 879 MobiDBLite consensus disorder prediction 769 792 - -
Mibi08g0205 879 SUPERFAMILY RNA-binding domain, RBD 153 239 IPR035979 GO:0003676
Mibi08g0205 879 Pfam SPOC domain 487 600 IPR012921 -
Mibi08g0205 879 MobiDBLite consensus disorder prediction 1 21 - -
Mibi08g0205 879 MobiDBLite consensus disorder prediction 671 702 - -
Mibi08g0205 879 MobiDBLite consensus disorder prediction 445 459 - -
Mibi08g0205 879 MobiDBLite consensus disorder prediction 1 36 - -
Mibi08g0205 879 Gene3D - 152 243 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0205 Mibi-ChrMibi08 3037863 3047169 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0205 24 233 Eukaryotic Initiation Factors Gene Family AT4G34110 23.982 6.49e-07 51.2