Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0177 ATGGCTGAAGCTTCAACAACAACCCTTCACACAACAACCCTCATTCCCACTTTCACTCACACCACCAACCACAAATCTCAAGCGATTCTTCGTCATCTACATTTCCCTCGAAGAAAGCCCCAATTTCATTGTTCAATTTCTGCGAGCGATAATGCCACCAAAATCGCCGCCACAGAAACCATCCCTTGGGGCTGCGAAATCGACTCTCTGGAAAACGCATCGGCTCTTCAGAGATGGTTGTCTGATTCTGGCCTACCTCCTCAGAAGATGGCCATTGAAAGGGTTGATGTTGGTGAGAGAGGTCTCGTTGCCTTGAAGAATATCAGGAAGGGAGAGAAGTTGCTCTTTGTGCCTCCTTCACTTGTCATCACCGCAGATTCTGCATGGAGCTGCCCTGAAGCTGGTGAGATTTTGAAAAGGAATTCGGTGCCAGATTGGCCACTGCTTGCAACCTATCTCATTAGTGAAGCAAGCCTCATGAAATCTTCAAGATGGAGCAGTTATGTTTCAGCCTTACCTCGGCAACCCTATTCACTTCTTTACTGGTCACAAGCCGAACTAGATCGTTATTTGGAAGCTTCACAGATTCGGGAGAGGGCAACTGAAAGGATTAATAATGTTATTGGAACATACAACGATTTGAGGCTCAGAATATTTTCCAAGCATCCGAGTTTATTCCCAGAAGAGGTGTTCAACATTGAGACCTTCAAGTGGTCATTTGGTATTCTTTTCTCTCGCTTGGTTCGATTACCCTCGATGGATGATAAGTTTGCCTTGGTTCCCTGGGCAGATATGCTGAACCATAGTTGTGATGTGGAAACGTTTTTGGATTATGATAAATCATCAAAGGGAGTTGTCTTCACCACAGATCGTCCCTACCAACCAGGTGAGCAGGTGTTTATATCGTATGGCAAGAAATCTAACGGAGAGCTTTTGCTATCTTATGGATTCGTTCCAAAGGAAGGCACTAATCCTAGTGATTCGGCTGAATTATTATTGTCACTCAGGAAATCTGATAAATGCTACGAAGAGAAGTTACAACTCTTGAAGAAAAATGGACTGTCAGCATCGCAGTGCTTCCCTGTAAAAGTTACTGGTTGGCCATTGGAGTTAATGGCATATGCCTATTTAGCTGTGAGCCCTTCAAGCATGAGAGGTCAATTTGAAGAGATGGCTGCTGCAGCATCGAATAAAACAACTGTAAAGAAGGACTTGAGATATGCTGAAATAGAAGAGCAAGCATTGCAATTTATACTAGACAGTTGTGAAACCAGCATATCAAAGTACAAAAGATTTTTACAGGAAAGTGGATCACTTGATTTGGACGTGACTTCTCCAAAACAACTCAACCGAAGACTCTTTTTGAAACAACTAGCTGTGGACTTGTGCACTAGCGAGCAAAGAATACTATTTCGCGCTCAATATATACTGCGAAGCAGACTGAGGAATATGAGGACTGGGGGATTAAGAGCCCTACAAATTTTCGATGGGTTTAGGAATTTTTTCCAATGA 1512 0.4325 MAEASTTTLHTTTLIPTFTHTTNHKSQAILRHLHFPRRKPQFHCSISASDNATKIAATETIPWGCEIDSLENASALQRWLSDSGLPPQKMAIERVDVGERGLVALKNIRKGEKLLFVPPSLVITADSAWSCPEAGEILKRNSVPDWPLLATYLISEASLMKSSRWSSYVSALPRQPYSLLYWSQAELDRYLEASQIRERATERINNVIGTYNDLRLRIFSKHPSLFPEEVFNIETFKWSFGILFSRLVRLPSMDDKFALVPWADMLNHSCDVETFLDYDKSSKGVVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSAELLLSLRKSDKCYEEKLQLLKKNGLSASQCFPVKVTGWPLELMAYAYLAVSPSSMRGQFEEMAAAASNKTTVKKDLRYAEIEEQALQFILDSCETSISKYKRFLQESGSLDLDVTSPKQLNRRLFLKQLAVDLCTSEQRILFRAQYILRSRLRNMRTGGLRALQIFDGFRNFFQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0177 503 Pfam Rubisco LSMT substrate-binding 337 470 IPR015353 -
Mibi08g0177 503 Gene3D - 323 486 IPR036464 -
Mibi08g0177 503 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 493 IPR036464 -
Mibi08g0177 503 PIRSF RMT_SET 1 500 IPR011192 GO:0009507|GO:0030785
Mibi08g0177 503 Pfam SET domain 100 304 IPR001214 GO:0005515
Mibi08g0177 503 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 64 437 - -
Mibi08g0177 503 Gene3D set domain protein methyltransferase, domain 1 41 317 - -
Mibi08g0177 503 SUPERFAMILY SET domain 72 321 IPR046341 -
Mibi08g0177 503 ProSiteProfiles SET domain profile. 88 304 IPR001214 GO:0005515
Mibi08g0177 503 CDD SET_RBCMT 87 318 IPR044431 GO:0016279|GO:0018022
Mibi08g0177 503 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 56 317 - -
Mibi08g0177 503 SMART set_7 88 310 IPR001214 GO:0005515
Mibi08g0177 503 FunFam Rubisco methyltransferase family protein 323 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0177 Mibi-ChrMibi08 2727937 2732740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0177 75 273 NAC Transcription Factor Family AT3G56570 23.786 1.96e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mibi08g0177 SET 1.6e-17 No_clan