Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0135 ATGCAATCCGACAATGGTAAGTTATTTATCGGTGGGATATCATGGGACACAAATGAAGAGCGGCTTAGAGAGTATTTCAGTTCTTATGGGGAGGTTGTGGAAGCAGTGATTATGAAGGATCGGACTACTGGTAGAGCTCGTGGATTTGGTTTTGTAGTTTTTGCAGACCCAACTGTTGCAGAGAGAGTCATAAAAGAGAAACACAGCATTGATGGAAGGATGGTTGAGGCCAAGAAGGCTGTTCCTAGAGATGACCAGAGCATACTGAGTAGAAACAGCGGTAGCAACCATGGTTCTCCTGGTCCAGGCCGCACTAAAAAAATATTTGTTGGTGGTTTAGCATCTACAGTTACAGAGAGTGATTTCAAGGCATACTTTGAACAATTCGGGACGATAACGGATGTTGTAGTGATGTACGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATTACTTATGATTCTGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACCTTCCATGAATTGAATGGAAAAACGGTTGAGGTCAAGCGTGCAGTCCCTAAGGAACTATCACCCGTGCCAAACCGAAGCCCACTTACTGGATATAACTATGGTATCAATAGGGTTAATAGTTACCTAACTGGCTTTACCCAGGGCTATACTCCAGGTGCTGTTGGAGGCTTTGGACTCAGGGTGGATGGTAGATTCAGTCCTGTTGCAAGTGGCCGAAGTGGATTTTCTCCATTCGGATCTGGTTATGGAATGAATATGAATTTAGAGCCCAGTTTGAGCCCTGGATTTGGAGGGAATGCAAATTTCAATAGCAATCTTAATTATGGTCGGGCGATAAATCCATATTATGTTGGAAGCTCAAGTAGGTTTGGGAATCATATTGGATATGATGGTAATAATGGAGGGAACAATTCTTTCTTCAGTTCTGTTACTCGGAACTTGTGGGGAACCGGTAGCCTTAATTATGGAACAAGTTCTGCTAATTCCAGTGGATACACAGGATCAGGAAGTGGGAGTGTTGGAGGAAACATTTATGGCAATGTTGGAACCAATTGGGGTTCTTCAGCAATTTCTGCTCAAGGTATAATGAACAATGTGTCACAAACTACTGGTGGCAACCTTGGCTTTGGGGGAGACGACAGTAGTTATGGTTTGGGAACTGGAGGGTATGGAAGAAACAGTGGTACAAATATTGCTCCATCATCATCACACTCTGCATCTAATGGTGGTTTTGATGGAGCTTTTGCTGATTCATATAATAATAGTTCAGTTTACGGGGACCCCACTTGGCGGATTTCAAATTCTGAGCTAGATGGGGCTGGTCCCTTTGGTTATGGGCTTGGTGCTGCAGCTTCAGATGTTTCTGCTAAAAGCTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGGGGATAA 1431 0.4333 MQSDNGKLFIGGISWDTNEERLREYFSSYGEVVEAVIMKDRTTGRARGFGFVVFADPTVAERVIKEKHSIDGRMVEAKKAVPRDDQSILSRNSGSNHGSPGPGRTKKIFVGGLASTVTESDFKAYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKTVEVKRAVPKELSPVPNRSPLTGYNYGINRVNSYLTGFTQGYTPGAVGGFGLRVDGRFSPVASGRSGFSPFGSGYGMNMNLEPSLSPGFGGNANFNSNLNYGRAINPYYVGSSSRFGNHIGYDGNNGGNNSFFSSVTRNLWGTGSLNYGTSSANSSGYTGSGSGSVGGNIYGNVGTNWGSSAISAQGIMNNVSQTTGGNLGFGGDDSSYGLGTGGYGRNSGTNIAPSSSHSASNGGFDGAFADSYNNSSVYGDPTWRISNSELDGAGPFGYGLGAAASDVSAKSSPGYVGGYTVNKRQPNRG 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0135 476 Gene3D - 4 88 IPR012677 -
Mibi08g0135 476 MobiDBLite consensus disorder prediction 453 476 - -
Mibi08g0135 476 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Mibi08g0135 476 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Mibi08g0135 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Mibi08g0135 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Mibi08g0135 476 Gene3D - 103 188 IPR012677 -
Mibi08g0135 476 SMART rrm1_1 7 78 IPR000504 GO:0003723
Mibi08g0135 476 SMART rrm1_1 107 179 IPR000504 GO:0003723
Mibi08g0135 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Mibi08g0135 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 IPR000504 GO:0003723
Mibi08g0135 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Mibi08g0135 476 MobiDBLite consensus disorder prediction 86 100 - -
Mibi08g0135 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Mibi08g0135 476 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Mibi08g0135 476 MobiDBLite consensus disorder prediction 79 105 - -
Mibi08g0135 476 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Mibi08g0135 476 SUPERFAMILY RNA-binding domain, RBD 105 298 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0135 Mibi-ChrMibi08 2219552 2222276 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0135 8 219 Eukaryotic Initiation Factors Gene Family AT2G36660 29.148 3.66e-15 76.3