LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi08g0054	ATGCGGCGGATTAGTTCAACACAAGAAGAGCCTTCAGATATTTATCGCTTGAAGTTTTCTCTTTTGGAGATCAGCTTTTGTCCAGGTCAACGGTCATTCCAAATGGAACCCAGATTTGGGTTTCTTGTTCTCATGCTGGCTTCAATCTTTGCCGTCGCTAAATCACAGTGTAGCGAGACTTGTGATAGGGCTCTTGGTTCGTACTTTGTTAAGAATGGTACCAACCTCACTTACATTTCCAAGGTTATGAATTCCCAGCTTGTTTCAACCCCAGATGATATTGTCAGCTATAACAAAGACAAAATACCCAATAAAGACAGCCTTTCAGCGTCCATAAGGATCAACGTTCCCTTCCCATGTGAGTGCATCAATGGTGAATTTTTAGGCCACACGTTTCAATATGATGTTGTGACAGGGGACACCTACGATAAGGTTGCTGGGACAGCCTATGCCAATTTGACCACTGTTGACTGGTTGCGGAAGTTCAATAGCTATCCAGCTGATAATATTCCTGACACTGCAATCTTAAATGTCACCATTAACTGTTCCTGCGGGAATAGAGATGTCTCTAAGGATTATGGATTGTTCATCACCTACCCACTTTTGCCTGGGGAGACCTTGCAGTCAGTGGCAAATGAGGTGGGTCTTGGCAATGACACCGGCCTACTGCAGAGGTACAACCCTTCTGTGAATTTCAACCAAGGAAGTGGTCTGGTTTTTATTCCGGGCAAAGATCAAAATGGTACCTATGTGCCGCTTCAGTTAAGAAAGGCTGGAGGTCTTTCTACTGGGGCTATAGTTGGAATATCCATTGGAGTAGTAGTAGGGCTTCTGCTATTGGCAATTGGTTTATATTTTGGCTATTTTAAAAAGAAGAAGACAGGCAAGGTTAAAGTACTCTCCCAAGAGTTCCAAGGTCTCACTTCTCAGGATAGGAGGGATACAACCACTGGTAATGATGAAAATGGAACTTCAGTGTCTGGTGGTCCTGTTTCTCCTATTGCTGGCATGGCTAATATTACAGTGGACAAATCAGTGGAGTTTTCATATGAAGAACTAGCTACTGCCACAAACAACTTTAATATGGCTAACATAATTGGTCAAGGTGGCTTTGGTGCTGTCTACTATGCAGAGCTGAGAGGAGAGAAAGCGGCAATCAAGAAGATGGATATGCAGGCAACAAGAGAATTTCTGGCTGAGTTGAAAGTCCTGACAAATGTTCATCATCTTAATTTGGTGCGTTTGATCGGTTATTGTGTTGAGGATTCTCTTTTCCTTGTTTATGAATACATTGAGAATGGAGACTTAAGTCAGCATCTCCGAAGTTCAGGAAGAGATCCACTGCCTTGGTCTACCCGGGTGCAAATTGCTCTGGATTCAGCACGAGGTCTTGAATATATTCATGAGCATACAGTGCCAGTATATATCCATCGTGACATAAAGTCAGCAAATATATTAATAGACAAAAACTTTCGTGGCAAGGTTGCAGATTTTGGATTGGCAAAACTGACTGAAGTTGGCAGCGGGACACTTCCCACTGGTCGTCTTGTGGGTACATTTGGATATATGCCTCCAGAATACGCTCAATATGGGGATGTTTCTCCTAAAATAGATGTCTATGCTTTTGGAGTAGTTCTCTACGAACTTATTTCTGCTAAGGAAGCTATCATCAAGATAAATGAATCTATCACAGACTCAAAGGGCATCATATCTTTGTTTGATGGAGTTCTTAATCAGCCAAATCCAATGGAAGATCTTCGCAAGTTGGTGGACCCAAGACTTGGGGATGACTACCCTATGGATTCAGTTTTCAAGATGGCCCAACTTGCCAAAGCATGCACGCAGGACAATCCCCAGCTGCGTCCAAGCATGAGATCTATTGTCGTTGCTCTTATGACACTTTCTTCCGCAACTGAGGATTGGGATGTTGGCTCCTTTTATGAAAATCCAGCTCTTATGAATCTCATGTCTGGAAGATAG	1980	0.4288	MRRISSTQEEPSDIYRLKFSLLEISFCPGQRSFQMEPRFGFLVLMLASIFAVAKSQCSETCDRALGSYFVKNGTNLTYISKVMNSQLVSTPDDIVSYNKDKIPNKDSLSASIRINVPFPCECINGEFLGHTFQYDVVTGDTYDKVAGTAYANLTTVDWLRKFNSYPADNIPDTAILNVTINCSCGNRDVSKDYGLFITYPLLPGETLQSVANEVGLGNDTGLLQRYNPSVNFNQGSGLVFIPGKDQNGTYVPLQLRKAGGLSTGAIVGISIGVVVGLLLLAIGLYFGYFKKKKTGKVKVLSQEFQGLTSQDRRDTTTGNDENGTSVSGGPVSPIAGMANITVDKSVEFSYEELATATNNFNMANIIGQGGFGAVYYAELRGEKAAIKKMDMQATREFLAELKVLTNVHHLNLVRLIGYCVEDSLFLVYEYIENGDLSQHLRSSGRDPLPWSTRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLAKLTEVGSGTLPTGRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAIIKINESITDSKGIISLFDGVLNQPNPMEDLRKLVDPRLGDDYPMDSVFKMAQLAKACTQDNPQLRPSMRSIVVALMTLSSATEDWDVGSFYENPALMNLMSGR	659

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi08g0054	659	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	475	487	IPR008271	GO:0004672\|GO:0006468
	Mibi08g0054	659	ProSiteProfiles	Protein kinase domain profile.	360	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi08g0054	659	MobiDBLite	consensus disorder prediction	308	328	-	-
	Mibi08g0054	659	ProSitePatterns	Protein kinases ATP-binding region signature.	366	388	IPR017441	GO:0005524
	Mibi08g0054	659	Gene3D	Phosphorylase Kinase; domain 1	334	430	-	-
	Mibi08g0054	659	FunFam	LysM receptor kinase 2	339	430	-	-
	Mibi08g0054	659	Gene3D	Transferase(Phosphotransferase) domain 1	431	645	-	-
	Mibi08g0054	659	FunFam	PTI1-like tyrosine-protein kinase 3	431	645	-	-
	Mibi08g0054	659	Pfam	Protein tyrosine and serine/threonine kinase	362	630	IPR001245	GO:0004672\|GO:0006468
	Mibi08g0054	659	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	42	645	IPR044812	GO:0019199\|GO:0045087
	Mibi08g0054	659	SMART	serkin_6	360	633	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi08g0054	659	SUPERFAMILY	Protein kinase-like (PK-like)	343	631	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi08g0054	Mibi-ChrMibi08	796575	803444	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi08g0054	43	659	Receptor kinase-like Gene Family	AT3G21630	58.132	0.0	714

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Mibi08g0054		PK_Tyr_Ser-Thr	9.1e-46	CL0016