Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g0015 ATGGCAAAGAAGCGAAAGATTCGATCATCTGAACCCGAATCTGCCAAGAACTCTGATTCACAACCCCAAGAACCGCAAATCCACGAGGAGGTTAAAGTGGACGAACAACCAAACCCCGAAGCAACCGTAGAAGAATCGCACGAAACGATGGCTGTGGATGAGGATGCGCATCAGGAAGATGCTAAGTTAGAAGAAAACGCGGATATGAGTGTACCTCCAGAAGTTCACCCGAATAGTGAGCACCCCGAAACGGCGGAAGATGCAGCCGATGCCGCCCCATCGGAGGCGAATGGGGCCGACGAAGGCAACGAGAACGACGGTGATGTTGAGGGTTTGGACGAAGAGGAGCCTTTAGAGAAGCTCCTCGAGCCTTTTACGAAGGAACAGCTGTACACTCTTGTGAAGCAAGCTGCAGAGAAGTACCCGGATTTTATCGACAACGTCCGTCAGCTGGCGGACGCCGACCCTGCCCACCGAAAAATATTCGTCCACGGTCTTGGCTGGGACACCACTGCTGAAACCCTTACGAGTGTTTTTGGCAAGTACGGGGAGATTGAGGATTGCAAGGCTGTCACTGATAGGGTCTCTGGAAAATCAAAAGGTTATGCCTTCATCTTGTTCAAGCACCGAAGTGGGGCTCGCAAGGCGCTGAAGCAGCCACAGAAAAAGATTGGGAACCGGACCACATCGTGTCAATTGGCATCCGCGGGGCCGGTGCCCTCGCCTGCTGCAGTGGCCCCACCTTCGTCTGAATATACTCAAAGGAAGATCTTTGTCAGCAATGTGAGTTCAGAAATCGATCCCCAAAAATTGCTCGAGTACTTCGGTCAATTTGGGGAGATAGAGGATGGTCCTTTGGGTCTTGATAAACAAACGGGCAAGCCAAAGGGATTTGCGCTGTTTGTATACAAGTCAGTGGAGAGTGCTAAGAAGGCTTTGGATGAGCCGAACAAGAACTTTGAAGGGCATACACTGTATTGCCAGAAGGCCGTTGATGGTCCTAAGGGAAACAAGGGATATCAGCAGCATCACCAACAGCAGCATCATTCTCATCACCATCACCATCAACATCAACCTCACTATCAGTCAAGAAAGGAGAAGAGTAGGTTTCAATCCTGCGCAGGGGCTAAATCCGGCGCTTGGGCAGGCCTTGACCGCTCTGCTAACTACCCAAGGTGCTGCTGGCCTGGGGCTGGGTAA 1200 0.5158 MAKKRKIRSSEPESAKNSDSQPQEPQIHEEVKVDEQPNPEATVEESHETMAVDEDAHQEDAKLEENADMSVPPEVHPNSEHPETAEDAADAAPSEANGADEGNENDGDVEGLDEEEPLEKLLEPFTKEQLYTLVKQAAEKYPDFIDNVRQLADADPAHRKIFVHGLGWDTTAETLTSVFGKYGEIEDCKAVTDRVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPSPAAVAPPSSEYTQRKIFVSNVSSEIDPQKLLEYFGQFGEIEDGPLGLDKQTGKPKGFALFVYKSVESAKKALDEPNKNFEGHTLYCQKAVDGPKGNKGYQQHHQQQHHSHHHHHQHQPHYQSRKEKSRFQSCAGAKSGAWAGLDRSANYPRCCWPGAG 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g0015 399 MobiDBLite consensus disorder prediction 332 369 - -
Mibi08g0015 399 Gene3D - 125 241 IPR012677 -
Mibi08g0015 399 SUPERFAMILY RNA-binding domain, RBD 241 353 IPR035979 GO:0003676
Mibi08g0015 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 236 IPR000504 GO:0003723
Mibi08g0015 399 MobiDBLite consensus disorder prediction 1 111 - -
Mibi08g0015 399 PANTHER GEO13361P1-RELATED 250 366 - -
Mibi08g0015 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 228 IPR000504 GO:0003723
Mibi08g0015 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 325 IPR000504 GO:0003723
Mibi08g0015 399 CDD RRM_RBM24_RBM38_like 159 234 - -
Mibi08g0015 399 CDD RRM_RBM24_RBM38_like 255 330 - -
Mibi08g0015 399 MobiDBLite consensus disorder prediction 342 362 - -
Mibi08g0015 399 Gene3D - 242 369 IPR012677 -
Mibi08g0015 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 332 IPR000504 GO:0003723
Mibi08g0015 399 MobiDBLite consensus disorder prediction 23 69 - -
Mibi08g0015 399 SUPERFAMILY RNA-binding domain, RBD 148 238 IPR035979 GO:0003676
Mibi08g0015 399 SMART rrm1_1 160 232 IPR000504 GO:0003723
Mibi08g0015 399 SMART rrm1_1 256 328 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g0015 Mibi-ChrMibi08 347174 348438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g0015 234 342 C2H2 Transcription Factor Family AT2G19380 29.358 3.44e-09 56.6